PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1395

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 281aa MW: 30819.7 Da PI: 8.4675

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1395	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.2e-40	16	75	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWtkGG+lrnvPvGgg+rknk+ Gh_D06G1395 16 QAQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTKGGTLRNVPVGGGCRKNKRL 75 67899*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	15	74	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-34	18	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.516	20	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	22	58	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MMMASTSKLM EKPSQQAQAL KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTKGGTL 60 RNVPVGGGCR KNKRLKRPAS AIAGATASPS SRPQIDVSSP STPPININPL FYGLATDTNL 120 PFPNCFDSRV SSGVETVTNY DLQPPQLNAF RPGFSSATAI VSSDSGDGDY GNGKQIQDVI 180 TSNPLLSTYS NIFTIATPTI ASLLASTLHQ HKFIDGGLEN TQPPTHFQAL PPFRDLHMTD 240 DIGAAIKDVK VEEPQRRMEW NVVQAQLEQI GSYDPVTAWH D

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683437.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A1U8IZ97	0.0	A0A1U8IZ97_GOSHI; dof zinc finger protein DOF1.4-like
STRING	Gorai.010G155200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	8e-40	Dof family protein