PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1638

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 293aa MW: 33305.1 Da PI: 9.7494

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1638	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.3	1.7e-33	71	124	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR+ Gh_D06G1638 71 PRLRWTPDLHQCFVHAVERLGGEDRATPKMVLQIMDVKGLTISHVKSHLQMYRS 124 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.315	67	127	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-32	67	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.56E-15	69	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-25	71	125	IPR006447	Myb domain, plants
Pfam	PF00249	6.9E-8	72	123	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MKRVDVDSCW LKGCCSSSSS LDDSGGISVY SPSPSMMRVM RRCHHKDDNL QLPEISLKSP 60 IVRPYVRSKM PRLRWTPDLH QCFVHAVERL GGEDRATPKM VLQIMDVKGL TISHVKSHLQ 120 MYRSTKHEQM IQVTEAATAS RRNEKVSELM NCPQNQQFKD QVRPYNLGLG IEGMPSCTIF 180 RQPQWNGNKV RNQLSYRELT NKGSEKRSST SYIIFKDLLK SCTIPENREK LNVGQHGGAD 240 WKCNHQRLVH LGDHSQASDC SILRSLNSKL SQKMSRHGKT EGLNDVSLEL TLA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	72	127	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578495	2e-65	JX578495.1 Gossypium hirsutum clone NBRI_GE10535 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681405.1	0.0	PREDICTED: probable transcription factor KAN4 isoform X1
TrEMBL	A0A1U8ITK7	0.0	A0A1U8ITK7_GOSHI; probable transcription factor KAN4 isoform X1
STRING	Gorai.010G181100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	2e-33	G2-like family protein