PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1825

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 127aa MW: 13941.8 Da PI: 9.4234

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1825	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.4	7.2e-31	51	121	1	71
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearard 71 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k l++lpe++r da+ss+vyeA ar+rd Gh_D06G1825 51 PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASARIRD 121 7********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.647	50	127	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.8E-30	51	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MEHNEKCAQS QSCSSSPRFP SPNSQSPPPP PPPPASPSLP PPPTPTVVLS PCAACKILRR 60 RCVEKCVLAP YFPPTEPYKF TIAHRVFGAS NIIKSLQELP ESQRADAVSS MVYEASARIR 120 DXRRIKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-28	50	121	10	81	LOB family transfactor Ramosa2.1
5ly0_B	1e-28	50	121	10	81	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.13579	0.0	ovule\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016671354.1	6e-81	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-44	LBD1_ARATH; LOB domain-containing protein 1
Swissprot	Q9SK08	2e-43	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1U8I6J4	1e-79	A0A1U8I6J4_GOSHI; LOB domain-containing protein 1-like
TrEMBL	A0A2P5QIB7	1e-79	A0A2P5QIB7_GOSBA; Uncharacterized protein
STRING	Gorai.010G203800.1	2e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	9e-46	LOB domain-containing protein 1