PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1905

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 224aa MW: 24347 Da PI: 9.9153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1905	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	53	75	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C F+++ L H++ H Gh_D06G1905 53 FSCNYCRSKFTSPQALGGHQNAH 75 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.9E-4	49	79	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.87E-6	50	80	No hit	No description
PROSITE profile	PS50157	10.72	53	80	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	55	75	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MASEAANASR VESSNLSNDN RSSRESEIGL NLSTTMNPII TSSENQPEPE RTFSCNYCRS 60 KFTSPQALGG HQNAHRQERA LAKRLREIQA QTFTPPTYPH YPYPTLSSTP YQGSLNRSIL 120 GVRLGSMICK PLHSWTLFGS GGYLSGHGYP RLAMRNHLPP SFNGRLSINN NAGIAISGPS 180 TSSRMVTGSG PLASFARNSQ ANVAANRPAT NHNDDSEIDL TLRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016755262.1	1e-163	PREDICTED: zinc finger protein 7-like
TrEMBL	A0A1U8PVS6	1e-162	A0A1U8PVS6_GOSHI; zinc finger protein 7-like
STRING	Gorai.010G215100.1	1e-144	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24595	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-15	zinc-finger protein 1