PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2013
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 399aa    MW: 45992.1 Da    PI: 4.3693
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2013genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.6e-17168252286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt++e+ +L++a  ++  + +r++l+   W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  + t ++ss+++yf++++
  Gh_D06G2013 168 WTERETFVLLDAWGDLFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMLAE-TGGTSSKWVYFKKMD 252
                  *************************************762678**************************9.699999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-22167254No hitNo description
PROSITE profilePS500906.481168225IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-4168233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDNIEDNARH PSNPYGVGHQ PGYRSSNHQK LSVSNNPYVR PTGNQYVVDD EDEEEEENDE  60
DLEEEENRNR NNGVRYVGKD MDDVDDDDND ELDDDEDGDE DDYDENGDKQ KGYDGKNDDV  120
DMERHPKKRK LKSLLSSYEF APRVPAPAVS APSVPKPSFG GRNSLTDWTE RETFVLLDAW  180
GDLFLQRGRK SLRSEEWQEV AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMLAETGG  240
TSSKWVYFKK MDMLMSTPPQ QGGLSCGLDS GEYVFMNPRV YLNRANGLDE MRDSPADSES  300
ADSEEDVSDG LPPKKRRFGR QYDEGSSFRL LADLIQKFSD TYEKIEDSKR QQMLELEKMR  360
MDFHRELEMQ KQHIMERAQA EIAKIQQQAD DEENEKASG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709914.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A1U8L9U30.0A0A1U8L9U3_GOSHI; trihelix transcription factor ASIL1-like
STRINGGorai.010G228000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-60Trihelix family protein