PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2049
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 170aa    MW: 19450.6 Da    PI: 7.9918
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2049genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.56.6e-3116113296
       DUF260   2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFG..asnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                  C aCk++rr+C++ C +apyfp+ ++++++n+hklFG  + nv+kl++++++   +++a+++++ ++++ra+dPv G+++vi++lq+q+e+++ael++
  Gh_D06G2049  16 CLACKYQRRRCPAYCLFAPYFPHGHEQQLKNMHKLFGsgMVNVIKLVRTIEDPLkKDIAIRTIMVQSDMRAKDPVGGCYRVIQELQHQIECTQAELDQ 113
                  9***********************************733789********65553999*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.74914118IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-2916113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSIPTSGNTA IVTEDCLACK YQRRRCPAYC LFAPYFPHGH EQQLKNMHKL FGSGMVNVIK  60
LVRTIEDPLK KDIAIRTIMV QSDMRAKDPV GGCYRVIQEL QHQIECTQAE LDQIYYTIAI  120
CRTQNAHRLQ MQKIDDGDRC QMMNKLPLIG FETEKLANLS IKSDDNIGEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-201611512108LOB family transfactor Ramosa2.1
5ly0_B4e-201611512108LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725615.11e-126PREDICTED: LOB domain-containing protein 22-like
SwissprotQ9LRW11e-31LBD22_ARATH; LOB domain-containing protein 22
TrEMBLA0A1U8MFR21e-125A0A1U8MFR2_GOSHI; LOB domain-containing protein 22-like
STRINGGorai.010G232100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2210235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.15e-34LOB domain-containing protein 22
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]