PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2135
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 384aa    MW: 44488.4 Da    PI: 5.0425
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2135genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lp++Fkhsnf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
   Gh_D06G2135  14 FLTKTYEMVDDHSTDSIVSWSASNRSFIVWNPLEFARDLLPRFFKHSNFSSFIRQLNTYGFRKSDPEQ---------WEFANEDFIRGQPHLLKNIH 101
                   9********************999***************************************99988.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Gh_D06G2135 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.57E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDDAQSSSSS LPPFLTKTYE MVDDHSTDSI VSWSASNRSF IVWNPLEFAR DLLPRFFKHS  60
NFSSFIRQLN TYGFRKSDPE QWEFANEDFI RGQPHLLKNI HRRKPVHSHS MQNLLGQGAS  120
PLTESERQGF RDEVERLNSE KMSLVLELKR HEEERQGFEM QMQILRERLQ TMERRQQSMV  180
SNVARALKRP GFPIDPTPQF EAHVRKRRLP RIAYLYDESR IEDNPNPDTT SMSNTDPFEQ  240
LESSMVFWEN AIHDFGRANV FDESTSCPES PSISSIQLNI ETQPKSPQID MNSEPSTVVT  300
PEPVTSMEQP APSPAGVNDG FWEQFLTENP GSTDIREVLP ERKDPDTRKD EDKPEGHSRF  360
WWNNMKNVNN LTEQMGHLTS AERT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23410319129Heat shock factor protein 1
5d5v_B2e-23410319129Heat shock factor protein 1
5d5v_D2e-23410319129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.217550.0boll
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674130.0KR067413.1 Gossypium hirsutum HSF32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016752030.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-127HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1U8PLG80.0A0A1U8PLG8_GOSHI; heat stress transcription factor A-4a-like
STRINGGorai.010G240800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-121heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]