PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2167
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 775aa    MW: 84941.7 Da    PI: 6.5477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2167genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.12.7e-07240259525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ffar G+C  G++C+F H
  Gh_D06G2167 240 ICDFFAR-GWCIKGSSCRFLH 259
                  6******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.089235262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6235259IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-5240259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MSSSTSAAVP RAGNDDEIRA ASIMEREINS SDMEIDDDDE NEEDLQSSSN RNDAGNVVES  60
RGHDGQLGSD LSSTPGNCEP RIPAKTLNVG EGSANFEFSS LPNESLATQK EGLCTNYVAS  120
KYSVSGKEPA KENGIQEYMG NGKDSRNMLE RKASQDYPDQ HTNGKGHFVV DESNSLPVGY  180
HSGGVNNGLG FEEKNKQMDV QTDDDKRKIK SRFHRSAAPQ TSAGSLSPSS NSENKRPALI  240
CDFFARGWCI KGSSCRFLHI KDGGKNPGQL PEEDTAAADG KRAVELDEGF RSAAERSRSP  300
ASADALPSSV VNKTGLSSHF FSERILPLGH DENQRLHLFH EMNKFPLLQS KGKSLGTAPA  360
SQWFSASTDD FGPSKDVRQN GIGQNLPVSL SDRSTFGNGF LPEYKSSLSG SVTSLGDIYS  420
ENQSHHVSTH LVSLPLNFSL SACSLGAQKM LDNDRRCHTS KLSSLLQGPF PFSSSKPEKF  480
LVNDVASDPL HFSENRIKIS SDDWEPSVPF RPSFFVTSGI SSPRGEYDPL RDSIDVSSAV  540
ERPLKFSFSN QGPSLLNVAD PPTYGNFASR RPLLPERNDD KRTASCHNGV HENLVSSNCN  600
PSGKDSLTTD ANDGTSAVDM QNGTLVKEEI SSVASHVKDI SKANKNDRDH DGRHRRGGSR  660
CKKDLEVDRV REKNEIDVEV EHKADGDYKE SKAMRRFHAA LVDLIKQLLK PTWREGHLSK  720
DAHNTIVKKA VDKVFGSIQP HQLPVTFESV KQYLSSSQPK ITRLVEGYIE KYKKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.215050.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5825134e-38JX582513.1 Gossypium hirsutum clone NBRI_GE15352 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016751997.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A1U8PLD60.0A0A1U8PLD6_GOSHI; protein FRIGIDA-ESSENTIAL 1-like isoform X1
STRINGGorai.010G256500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-46C3H family protein