PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2219
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 201aa    MW: 23280.4 Da    PI: 5.0258
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2219genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.89.4e-28161392128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                  ppG+rF+Ptd el+++yL kkv+g++l+  ++i+e++iy     ePw++   +++++k  y F+k +kk ++gk+  r++  g+Wk + +  +++  +
  Gh_D06G2219  16 PPGYRFEPTDIELLQDYLLKKVNGEPLPY-NIISECEIYGNqgkEPWKIF--IETSTKTFYVFTKLKKK-SKGKNIDRVAGCGTWKGQRT-DPIMY-E 107
                  9****************************.89******9754459****6..66677788888888776.689*************9876.67777.7 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  + ++g +k +vf  + +++g+k +W+mhe++l
  Gh_D06G2219 108 EMKIGNRKLFVFQVKGSNEGVKGHWIMHEFSL 139
                  899**********9999*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-326158IPR003441NAC domain
PROSITE profilePS5100530.92115158IPR003441NAC domain
PfamPF023654.0E-1816139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MELDTYDYEF LMTGIPPGYR FEPTDIELLQ DYLLKKVNGE PLPYNIISEC EIYGNQGKEP  60
WKIFIETSTK TFYVFTKLKK KSKGKNIDRV AGCGTWKGQR TDPIMYEEMK IGNRKLFVFQ  120
VKGSNEGVKG HWIMHEFSLV DEEDKQIGDY VLCSIRNKNA KDGTEEEEPP MKKMRYNSED  180
HNPPEPTSSA SPLQTLLSDW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-221516017167NO APICAL MERISTEM PROTEIN
1ut4_B6e-221516017167NO APICAL MERISTEM PROTEIN
1ut7_A6e-221516017167NO APICAL MERISTEM PROTEIN
1ut7_B6e-221516017167NO APICAL MERISTEM PROTEIN
3swm_A6e-221516020170NAC domain-containing protein 19
3swm_B6e-221516020170NAC domain-containing protein 19
3swm_C6e-221516020170NAC domain-containing protein 19
3swm_D6e-221516020170NAC domain-containing protein 19
3swp_A6e-221516020170NAC domain-containing protein 19
3swp_B6e-221516020170NAC domain-containing protein 19
3swp_C6e-221516020170NAC domain-containing protein 19
3swp_D6e-221516020170NAC domain-containing protein 19
4dul_A6e-221516017167NAC domain-containing protein 19
4dul_B6e-221516017167NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016667664.11e-149PREDICTED: NAC domain-containing protein 41-like
TrEMBLA0A1U8HWE11e-148A0A1U8HWE1_GOSHI; NAC domain-containing protein 41-like
STRINGGorai.010G251100.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.16e-26NAC domain containing protein 52