PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2259

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 352aa MW: 38105.7 Da PI: 7.8354

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2259	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	57	111	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLH+rFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Gh_D06G2259 57 KQRLRWTHELHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 111 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.014	54	114	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-32	56	112	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-17	56	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-26	57	112	IPR006447	Myb domain, plants
Pfam	PF00249	2.8E-9	59	110	IPR001005	SANT/Myb domain
Pfam	PF14379	3.3E-17	143	197	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGSYMQYEQQ MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL 60 RWTHELHDRF VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS 120 DGKKPDKKET GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLEAYFTSD IQQVQRQLQL 180 RIEAQGKYLK KIIEEQRLGG VLAEAPGTGA SVPALGDNGL ESDKKTDPGT PAPTSESPLQ 240 DKAAKEGTSA KSHSVDESFS SHHEPLTPDS GCHVGSPAGS PKGEMLKKKQ RVSMAGAFAK 300 PEMLLPHQIL DSSINASYQQ SQSVFMGEQF NPSSGISIRN ENQSGKGSGT EL

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGSYMQYEQQ MYHPKTVPGS SLVRSNSLVH GQHLDCGASS MDPVSGGNSS NPNLASKQRL  60
RWTHELHDRF VDAVAQLGGP DRATPKGVLR VMGVQGLTIY HVKSHLQKYR LAKYLPDSSS  120
DGKKPDKKET GDMLSNLDGS SGMQITEALK LQMEVQKRLH EQLEAYFTSD IQQVQRQLQL  180
RIEAQGKYLK KIIEEQRLGG VLAEAPGTGA SVPALGDNGL ESDKKTDPGT PAPTSESPLQ  240
DKAAKEGTSA KSHSVDESFS SHHEPLTPDS GCHVGSPAGS PKGEMLKKKQ RVSMAGAFAK  300
PEMLLPHQIL DSSINASYQQ SQSVFMGEQF NPSSGISIRN ENQSGKGSGT EL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-22	57	114	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	57	114	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	57	114	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	57	114	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.8840	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016755687.1	0.0	PREDICTED: myb family transcription factor APL-like
Refseq	XP_016755688.1	0.0	PREDICTED: myb family transcription factor APL-like
Swissprot	Q9SJW0	1e-124	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A2P5WFR7	0.0	A0A2P5WFR7_GOSBA; Uncharacterized protein
STRING	EOY29060	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8753	25	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-109	G2-like family protein