PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2261

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LSD

Protein Properties

Length: 247aa MW: 27115.1 Da PI: 10.2741

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2261	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.2	3.5e-15	159	183	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V Gh_D06G2261 159 CGHCRTTLMYPYGAPSVKCAVCQYV 183 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.1E-12	156	186	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.0E-14	159	183	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGSHCKRHYD ITMSKRTRKP LNLQEANRQS QNHSSERDII PLKSIAHILD QSSPRKGEHE 60 GGDRKSLKQL IKGDENANSK EMMGRSAKSS TSLTLGHHFT EEEKQLQLVT KHQHDNGLKL 120 KEIMSRYAKV LRHLVKVKPC LLSFSEHGVA SNQISHITCG HCRTTLMYPY GAPSVKCAVC 180 QYVTNVGMGN VRVPLPVNRP NGKAATGSMA TPSASPSQTV VVENPMSVDE SGKLVSNVVV 240 GITTGKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.1349	1e-161	boll\| embryo\| ovule\| root

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638675.1	4e-74	PREDICTED: protein LSD1-like isoform X1
Refseq	XP_017638676.1	4e-74	PREDICTED: protein LSD1-like isoform X1
Refseq	XP_017638677.1	4e-74	PREDICTED: protein LSD1-like isoform X1
TrEMBL	A0A0D2UK97	5e-93	A0A0D2UK97_GOSRA; Uncharacterized protein
STRING	Gorai.010G246800.1	8e-94	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	6e-41	LSD family protein