PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G2298
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 274aa    MW: 30496.3 Da    PI: 9.3775
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G2298genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.5e-32109162255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Gh_D06G2298 109 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 162
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.18E-15106163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28107163IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23109162IPR006447Myb domain, plants
PfamPF002491.6E-7110161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MMRTTALPDL SLQISPPSVK EMADDGLSMK SIYSDRSSTT DSGSSGSDLS QENGYFNNPI  60
EPTLSLGFEM VHHHQHHHNH QYQPQIYGRN FKRSSRTNIN GAKRSIRAPR MRWTTTLHAH  120
FVHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDKGS GQMQADMKLN  180
QRSGIVDLDG RLISPQPTPQ RTQSGSWLPS MEVNNLSISS NGNGLTLHPN DAKVDGDNKV  240
LHLSNPDMLL NLEFTLGRPS FAHESSNDLT LLKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17110164357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17110164357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17110164357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17110164357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17110164458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During ovule development, first expressed in the inner integument primordium and then on the abaxial side of the inner integument. {ECO:0000269|PubMed:16623911}.
UniprotTISSUE SPECIFICITY: Expressed in the periphery of the primary root apex and lateral root. {ECO:0000269|PubMed:15286295}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2719891e-79KP271989.1 UNVERIFIED: Populus trichocarpa isolate Potri.014G037200_BESC-125 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016723688.10.0PREDICTED: probable transcription factor KAN4
SwissprotQ9FJV51e-70KAN4_ARATH; Probable transcription factor KAN4
TrEMBLA0A1U8MDN80.0A0A1U8MDN8_GOSHI; probable transcription factor KAN4
STRINGGorai.010G015500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65722844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.13e-63G2-like family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA
    Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS.
    Plant Physiol., 2016. 172(4): p. 2403-2415
    [PMID:27794102]