PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2304

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 204aa MW: 21909.8 Da PI: 4.9851

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2304	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	89.1	5.6e-28	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+ + +++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ e Gh_D06G2304 2 SCNGCRVLRKGCSETCVLRSSLrwiesAEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHICQAALE 99 6*******************9999777889*************************************************************999 PP DUF260 94 lallk 98 ++l++ Gh_D06G2304 100 TVLQG 104 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.456	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.2E-24	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESAE AQGNATLFLA KFFGRSDLLS LISSVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAALET VLQGGALRPI SAGSWTPSCD 120 ESSDRFCVNS CNFESKPLTT TMMMTGNQSV LTAPSDLSLS VTAKLGGEMR TKTVSFYSEE 180 SEITTLGSNG NEETQDTKIL NLFV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012450312.1	1e-146	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SZE8	2e-68	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A0D2U7Q1	1e-145	A0A0D2U7Q1_GOSRA; Uncharacterized protein
STRING	Gorai.010G025100.1	1e-146	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	1e-70	LOB domain-containing protein 39