PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0130
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 191aa    MW: 20830.1 Da    PI: 4.6497
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0130genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-171666155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s++kGVr +k +g+Wv+eIr p++   r r++lg++ tae+Aa+a +aa  +l+g
  Gh_D07G0130 16 SRFKGVRKRK-WGKWVSEIRLPNS---RERIWLGSHETAEKAARAFDAALFCLRG 66
                 789****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.67E-301676No hitNo description
PfamPF008471.8E-101666IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-191676IPR016177DNA-binding domain
PROSITE profilePS5103221.4431774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-291775IPR001471AP2/ERF domain
SMARTSM003802.3E-311780IPR001471AP2/ERF domain
PRINTSPR003678.9E-91829IPR001471AP2/ERF domain
PRINTSPR003678.9E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVKHLSEKSA VETSDSRFKG VRKRKWGKWV SEIRLPNSRE RIWLGSHETA EKAARAFDAA  60
LFCLRGRSAK FNFPDNPPEI AGGTSLSPHE IQAAAARFAN SEPSTIHSEQ TDSAFQMESP  120
SPSVSDATVQ FDGSAMDLLT MGSGNGVSDY GIFPGFDDFS SDVLGSSMLN IGDEDENFDG  180
ILIPGSFLWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-141074772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.49200.0boll| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO841439520.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719635.11e-139PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC23e-56ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A1U8LYJ71e-137A0A1U8LYJ7_GOSHI; ethylene-responsive transcription factor ERF017-like
STRINGGorai.001G016800.11e-135(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]