PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0155
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 214aa    MW: 23510.5 Da    PI: 4.6425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0155genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.1e-192273156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 s+ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g+
  Gh_D07G0155 22 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAAQYCLRGN 73
                 89*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-202281IPR016177DNA-binding domain
CDDcd000181.50E-262282No hitNo description
PfamPF008475.6E-122272IPR001471AP2/ERF domain
SMARTSM003804.5E-292386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-282381IPR001471AP2/ERF domain
PROSITE profilePS5103221.6282380IPR001471AP2/ERF domain
PRINTSPR003675.1E-92435IPR001471AP2/ERF domain
PRINTSPR003675.1E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVKPTQTEAT TNHGSDPTGN GSKYKGVRKR KWGKWVSEIR LPNSRERIWL GSYDSPEKAA  60
RAFDAAQYCL RGNGAKFNFP DNPPDIAGAT SLGPHEIQAV ASRFANESVN NNNAMTDRTV  120
EQYTTSSSVS VSDGGVATQV ESHETRTDWS SFLSMLDSNE GMSSDYGFYP GLGHLPGDQF  180
YPPPPPPPVD DDMDDDQNYA GDGFSQHSSF LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1523801472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165960.0ovule
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098763700.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9441690.0KJ944169.1 Gossypium hirsutum cultivar Reba B50 ethylene-responsive transcription factor ERF-IIb1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486132.11e-149PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A0K0M9J91e-158A0A0K0M9J9_GOSHI; Ethylene-responsive transcription factor ERF-IIb1
TrEMBLA0A2P5QRN31e-158A0A2P5QRN3_GOSBA; Uncharacterized protein
STRINGGorai.001G019100.11e-148(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.18e-52ERF family protein