PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0334

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 332aa MW: 37271.9 Da PI: 6.9511

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0334	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.9	7.4e-07	48	90	5	41
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ +++ C+ + lC C +++H+ H + p Gh_D07G0334 48 LCQVCEQAPAHVTCKADAAALCVACDQHIHSAnplarqHVRLP 90 69****************************6567777776655 PP
2	CCT	67.4	3.8e-23	271	314	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRK +Ae RpR+KGrF+k++ Gh_D07G0334 271 REARVLRYKEKRKKRKFEKTIRYASRKSYAEMRPRIKGRFAKRT 314 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.438	1	43	IPR000315	B-box-type zinc finger
SMART	SM00336	5.3E-5	1	48	IPR000315	B-box-type zinc finger
CDD	cd00021	3.58E-4	6	48	No hit	No description
PROSITE profile	PS50119	10.068	44	91	IPR000315	B-box-type zinc finger
CDD	cd00021	2.35E-7	48	91	No hit	No description
SMART	SM00336	1.0E-8	49	91	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.39	271	313	IPR010402	CCT domain
Pfam	PF06203	5.4E-17	271	313	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MASKFCDSCK LATSDLFCRP HSAFLCCNCD STTHAANHLA SPHPRVCLCQ VCEQAPAHVT 60 CKADAAALCV ACDQHIHSAN PLARQHVRLP IIPFYDSDNS VPAVKSNCAV NNFLDEPYFS 120 AVDGDTYVNQ EETEAAFWLL PNPNHKDVES PDVYTGQFLF SEIDLYLDLD YVPLNLNIET 180 PEQTCSGTDA MVPTQSKSVE DPPVNHRCVN SDFTRSKPFT NYGYNPHSHS LSASSSLEVG 240 VVPDGSAMMR EISKQQGRRT ESMHELASAE REARVLRYKE KRKKRKFEKT IRYASRKSYA 300 EMRPRIKGRF AKRTDFEPDR TNIYGFGVVP SF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM201817	0.0	KM201817.1 Gossypium hirsutum cultivar SM3 CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201819	0.0	KM201819.1 Gossypium hirsutum cultivar JM CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201821	0.0	KM201821.1 Gossypium hirsutum var. punctatum CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201823	0.0	KM201823.1 Gossypium hirsutum cultivar Morrilli CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201825	0.0	KM201825.1 Gossypium hirsutum cultivar yucatanense CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201827	0.0	KM201827.1 Gossypium hirsutum cultivar Richmondii CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201829	0.0	KM201829.1 Gossypium hirsutum var. marie-galante CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201833	0.0	KM201833.1 Gossypium hirsutum f. palmeri CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201835	0.0	KM201835.1 Gossypium barbadense cultivar Hai7124 CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201837	0.0	KM201837.1 Gossypium barbadense cultivar Pima-1 CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201839	0.0	KM201839.1 Gossypium barbadense cultivar Junhai CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201841	0.0	KM201841.1 Gossypium barbadense cultivar Giza36 CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201843	0.0	KM201843.1 Gossypium barbadense cultivar 3-79 CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201845	0.0	KM201845.1 Gossypium barbadense cultivar acc. Mit-Afifi CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201847	0.0	KM201847.1 Gossypium barbadense var. peruvianum CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201849	0.0	KM201849.1 Gossypium barbadense var. peruvianum CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201851	0.0	KM201851.1 Gossypium barbadense var. brasiliense CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201855	0.0	KM201855.1 Gossypium mustelinum CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201857	0.0	KM201857.1 Gossypium darwinii CONSTANS-like 4 protein gene, complete cds.
GenBank	KM201859	0.0	KM201859.1 Thespesia populneoides CONSTANS-like 4 protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016744598.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
Swissprot	Q940T9	1e-109	COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBL	A0A1Z2TI09	0.0	A0A1Z2TI09_GOSHI; CONSTANS-like protein
TrEMBL	A0A2P5RK49	0.0	A0A2P5RK49_GOSBA; Uncharacterized protein
STRING	Gorai.001G039500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2760	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	1e-101	CONSTANS-like 4

Publications ? help Back to Top
Zhang R, et al. Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species. PLoS ONE, 2015. 10(2): p. e0118669 [PMID:25710777]