PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0342
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 257aa    MW: 29282.3 Da    PI: 8.4683
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0342genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-1622971599
                 -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  l++p +f++++ +g+ ++  +  +  + gr+W+vk+  r ++    +++GW++F+++++L +gDf+vF++ g++ f   v vf++
  Gh_D07G0342 22 HLSIPLSFFKDYlKGQINC--ESAVLRSYGRTWSVKI--RDRR----FEDGWQDFARDHDLHVGDFLVFRYGGNMVF--DVVVFDT 97
                 599*********9555444..5667778*********..7777....9***********************999999..7777765 PP
2B3551.5e-17141229697
                  ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ++  ++ks rl +p+kfa++++++  +s + +l de+grsW   ++ + ++g++++++GW++ +  n L  +D v ++l+g ++ ++ +k++
  Gh_D07G0342 141 LTLESMKSFRLNIPRKFARSNDLD--RSCETVLVDEQGRSWMASIRLKDSDGQVYIGRGWRNICIGNSLGLKDYVKLELIG-NGITPIFKIY 229
                  4778999***************99..5668**************************************************9.6777888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-216100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-208105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-201196No hitNo description
SMARTSM010195.2E-181398IPR003340B3 DNA binding domain
PfamPF023629.3E-132294IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2522398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-18132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-18134228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-18135230No hitNo description
PROSITE profilePS5086311.815136232IPR003340B3 DNA binding domain
SMARTSM010192.9E-18137232IPR003340B3 DNA binding domain
PfamPF023627.1E-16141230IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR  60
FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLTTQ TQQPAKEIGK  120
QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM  180
ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DYVKLELIGN GITPIFKIYK VASDSDAKKL  240
PNCSGSNAVV QEDQPEF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744594.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U8P3170.0A0A1U8P317_GOSHI; B3 domain-containing protein REM5-like
STRINGGorai.001G040300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-47B3 family protein