PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0346
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 355aa    MW: 40002.6 Da    PI: 7.2585
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0346genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-0792116126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+ C  f+  GtC+ G+ C+FaHg
  Gh_D07G0346  92 FKTRMCAKFRL-GTCRNGEGCNFAHG 116
                  69*********.*************8 PP
2zf-CCCH28.42.9e-09153175325
                  S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                  ++lC+ ++ + +C+yGdrC+F H
  Gh_D07G0346 153 MKLCKKYYNGEECPYGDRCNFLH 175
                  689******66************ PP
3zf-CCCH41.12.9e-13238264127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC  +  tG+C++G++C+FaHg+
  Gh_D07G0346 238 WKTKLCTKWETTGHCPFGEKCHFAHGQ 264
                  8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.4E-1487124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-889122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2291118IPR000571Zinc finger, CCCH-type
SMARTSM003560.06791117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-7150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023150178IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015150177IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-9153176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-16235268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-10236268IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6237264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723237265IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10238264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MNYPESRSSF MRTPQSTYAG SDAIGIWPEF PMNDWQFDPH SEFEQQQQQQ SPPFKRLRHS  60
EDNQSNIVQC TPTIPRMPSN PPTNKGTTNI FFKTRMCAKF RLGTCRNGEG CNFAHGIEDL  120
RQPPPNWQEL VGGREEERPS GNWDDDQKII HRMKLCKKYY NGEECPYGDR CNFLHEDPAK  180
FRDDMGRFRE SSAISIGTTA PPAGHGTASE QSEGNRPLNG GSSDAFQGNT KPVYPVYWKT  240
KLCTKWETTG HCPFGEKCHF AHGQTELQGM NGRIDGDFGN MGSGLTRIGS VSTKIHNLPA  300
NDPPPVTSSA PSLDEKAQAK NCLFKWKGPR KINRIYGDWL DDMPLVHNLP SQVES
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277611e-131HQ527761.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BXVU7 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744586.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
RefseqXP_016744587.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT818e-99C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1U8P0460.0A0A1U8P046_GOSHI; zinc finger CCCH domain-containing protein 39-like
STRINGGorai.001G040700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-100C3H family protein