PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0403

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 236aa MW: 26187.7 Da PI: 9.6854

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0403	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.6	1.5e-10	59	110	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ a +e+Er RR+++ + +++Lr+llP+ + ++K ++ +Av+YI ++ Gh_D07G0403 59 KKIARKEIERERRQQMGKLYQKLRSLLPPeS---IKGKRAASDHMNEAVNYITYM 110 577899*********************66...9***************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.27E-11	56	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.03	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.33E-6	59	114	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-8	59	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-8	60	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0086	64	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MFPSNQIDDY LFCATKSHIW GTRRGKSSNT ENGKGKGLKS LAVANNNDAN YAVSANDAKK 60 IARKEIERER RQQMGKLYQK LRSLLPPESI KGKRAASDHM NEAVNYITYM KKRIGELSIK 120 RDKVKKLSNR SALDLGSSSA SSSGINSCVV VHPFRSGVEI MISSGFGDQT WHLSTVLQAI 180 LEEGLDVVRC VSSQTIEGLL HTVQSEVTDP TQIDLSRLQT KLNDLMSYYD NAGCDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747225.1	1e-162	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A1U8P7W5	1e-161	A0A1U8P7W5_GOSHI; transcription factor bHLH118-like
STRING	Gorai.001G047300.1	1e-143	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17143	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	2e-26	bHLH family protein