PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0422

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 207aa MW: 22862.2 Da PI: 7.9426

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0422	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	8	28	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C ++Fs+ L H+++H Gh_D07G0422 8 CTICLRRFSNGKALGAHMKSH 28 ********************9 PP
2	zf-C2H2	14.2	0.00013	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F+++ L H +H Gh_D07G0422 150 YKCGTCNRTFRSHQALGGHRASH 172 9***************9999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	2.8	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.162	6	33	IPR007087	Zinc finger, C2H2
Pfam	PF13912	5.3E-7	7	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.11E-7	7	28	No hit	No description
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.11E-7	145	172	No hit	No description
Pfam	PF13912	2.1E-8	149	173	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.063	150	172	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.076	150	177	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	152	172	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDQNSRLCTI CLRRFSNGKA LGAHMKSHFG RFSSPSSTSS SNPPLASTKH ELSTESTESA 60 KYPTGKRSKT LRKFSSNMAM TGSPSDSVSS PLSVEDAALC LLMLSRDQRS NNPKLTQGYE 120 ISDAGVGSDN EKDEEDDEFF GAAKVHPKRY KCGTCNRTFR SHQALGGHRA SHKLKSKKIS 180 QEEEEEEDDE NGGDATDHKI HQQRTYL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX615837	0.0	JX615837.1 Gossypium hirsutum clone NBRI_GE60071 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747669.1	1e-153	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A1U8PBM7	1e-152	A0A1U8PBM7_GOSHI; zinc finger protein ZAT9-like
STRING	Gorai.001G049200.1	1e-129	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16232	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-13	C2H2-like zinc finger protein