PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0440
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 198aa    MW: 22528.4 Da    PI: 6.3667
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0440genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1770120255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp   + k  r++lg++++  +Aaka++ a+ k++g
  Gh_D07G0440  70 HYRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTYDSDVDAAKAYDCAAFKMRG 120
                  7********.**********9...6566**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3069129IPR001471AP2/ERF domain
PfamPF008478.7E-1370120IPR001471AP2/ERF domain
CDDcd000181.47E-2670128No hitNo description
SMARTSM003802.5E-3570134IPR001471AP2/ERF domain
PROSITE profilePS5103223.76270128IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2270130IPR016177DNA-binding domain
PRINTSPR003673.6E-137182IPR001471AP2/ERF domain
PRINTSPR003673.6E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPATFEESTT LEFIRQHLLG DFATVDAFIN TLDFGLSHLQ PQSHQLPEIF THGVEPAPIT  60
KEPFCEEKRH YRGVRRRPWG KFAAEIRDPN RKGIRVWLGT YDSDVDAAKA YDCAAFKMRG  120
QKAILNFPLE AGEGSQPPAV TTGRKRRREK RVWLPESDIT SPGSSEMAWE VKEEEGELDD  180
DDRNGLSLLT RKRVIVTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2769134469ATERF1
3gcc_A3e-2769134469ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147RKRRR
2143149RKRRREK
3143150RKRRREKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.163410.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO377304680.0
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1812510.0AY181251.1 Gossypium hirsutum ethylene-responsive element binding factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744472.11e-146PREDICTED: ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY053e-43EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLQ5YLQ71e-145Q5YLQ7_GOSHI; Ethylene-responsive element binding factor
STRINGGorai.001G051100.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-44ERF family protein
Publications ? help Back to Top
  1. Qiao ZX,Huang B,Liu JY
    Molecular cloning and functional analysis of an ERF gene from cotton (Gossypium hirsutum).
    Biochim. Biophys. Acta, 2008. 1779(2): p. 122-7
    [PMID:18078841]
  2. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]