PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0544

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 443aa MW: 49633.1 Da PI: 5.4639

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0544	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.6e-10	107	129	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gh_D07G0544 107 EDCAYYMKTGLCKFGFNCKFNHP 129 89********************9 PP
2	zf-CCCH	30.5	6.2e-10	150	173	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gh_D07G0544 150 QECKYYLRTGGCKFGKACRYNHSK 173 58********************95 PP
3	zf-CCCH	39.2	1.1e-12	194	218	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gh_D07G0544 194 GEKECPYYMRNGSCKYGANCRFNHP 218 6789********************9 PP
4	zf-CCCH	25.4	2.5e-08	331	356	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++f++tG Ck+ ++Ck++H++ Gh_D07G0544 331 GQTECSYFLKTGDCKFKSNCKYHHPK 356 6789********************96 PP
5	zf-CCCH	37	5.6e-12	377	401	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Gh_D07G0544 377 DQSICSYYSRYGICKFGPACKFDHS 401 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.49E-6	101	131	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.2E-4	103	130	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.235	103	131	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.5E-8	107	129	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.2E-4	109	128	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.0E-4	146	173	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.925	146	174	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.24E-6	148	174	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-7	150	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-4	152	173	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.7E-6	192	219	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.201	192	220	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.3E-10	194	218	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.28E-6	195	221	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.2E-5	198	217	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.6E-4	329	356	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.854	329	357	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-6	331	356	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	332	358	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	373	401	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	375	402	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.53	375	403	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-9	377	401	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.9E-5	379	402	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEEEEKDDVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF 120 GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP 180 ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYSNGGSVSL 240 QAASLVNMPS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQTTLYP PLERGLHPTP 300 AYVMSNPSTE TTAYTHHQPQ MVVDDFPERP GQTECSYFLK TGDCKFKSNC KYHHPKNRVP 360 KPTPCALSDK GLPLRPDQSI CSYYSRYGIC KFGPACKFDH SIQATPPTVS GLDQPRPLSH 420 STATEQAGIA RSNRADTAVQ QSV

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK  60
EEEEEKDDVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF  120
GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP  180
ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYSNGGSVSL  240
QAASLVNMPS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQTTLYP PLERGLHPTP  300
AYVMSNPSTE TTAYTHHQPQ MVVDDFPERP GQTECSYFLK TGDCKFKSNC KYHHPKNRVP  360
KPTPCALSDK GLPLRPDQSI CSYYSRYGIC KFGPACKFDH SIQATPPTVS GLDQPRPLSH  420
STATEQAGIA RSNRADTAVQ QSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012468545.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like
Swissprot	Q9STM4	1e-133	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0D2QLD4	0.0	A0A0D2QLD4_GOSRA; Uncharacterized protein
STRING	Gorai.001G061800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-131	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]