PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0572
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 216aa    MW: 24441.3 Da    PI: 9.134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0572genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.7e-164392255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +grWvAeI+  s   ++ r +lg+f+ +eeAa a+++a+  l+g
  Gh_D07G0572 43 RYLGVRQRP-SGRWVAEIKNSS---QKLRLWLGTFDQPEEAALAYDNAAMVLRG 92
                 689******.7******98832...46**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.7E-3143106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2743100IPR001471AP2/ERF domain
PROSITE profilePS5103219.80943100IPR001471AP2/ERF domain
CDDcd000184.18E-2943101No hitNo description
SuperFamilySSF541712.62E-1943101IPR016177DNA-binding domain
PfamPF008471.5E-114392IPR001471AP2/ERF domain
PRINTSPR003675.2E-74455IPR001471AP2/ERF domain
PRINTSPR003675.2E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVPQQDQSPN KNQTSIEPHE AQTMAENSEK RSIKKVINNG RRRYLGVRQR PSGRWVAEIK  60
NSSQKLRLWL GTFDQPEEAA LAYDNAAMVL RGKNAKTNFQ YEGNLNLIGK VNINPRVYQL  120
LQLTIMKNHA RSALRSINGK RMDPVDIDGF DTIVEETIFC DDHHHHHDHD EGGNNNNNNK  180
LCKVSLGNSK VYSSVVVAPS FCSSSIDQQG QKENNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14431061478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168570.0JX616857.1 Gossypium hirsutum clone NBRI_GE61800 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747650.11e-162PREDICTED: ethylene-responsive transcription factor ERF095-like
TrEMBLA0A1U8P9291e-161A0A1U8P929_GOSHI; ethylene-responsive transcription factor ERF095-like
STRINGGorai.001G064900.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-24related to AP2 11