PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0624

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 247aa MW: 28448.7 Da PI: 4.4982

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0624	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.5	1.6e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeelv++yLk+k++++++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v + + Gh_D07G0624 6 LPPGFRFHPTDEELVNYYLKRKINRQEIEL-DIIPEVDLYKCEPWELAeKsFFPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSC-Q 101 79**************************.99**********84335566888**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++++g+kktLv+y+grap+g +tdWvmheyrl Gh_D07G0624 102 NRAIGMKKTLVYYQGRAPQGIRTDWVMHEYRL 133 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-63	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.153	6	156	IPR003441	NAC domain
Pfam	PF02365	5.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAPLGLPPGF RFHPTDEELV NYYLKRKINR QEIELDIIPE VDLYKCEPWE LAEKSFFPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LVYYQGRAPQ 120 GIRTDWVMHE YRLDDNECEG TCGIQDSYAL CRVFKKNGMT GSETEEQGQS SLTVMDQYCS 180 QGVIMNDSET MYGEVPIGAS SSSCMEEEED KDDSWMQFIT DDPWCSSNCT AAMAGDELSN 240 TGFYNLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-55	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847199	6e-53	KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747664.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	1e-88	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1U8PBM2	0.0	A0A1U8PBM2_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.001G070700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-123	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]