PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0645
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 295aa    MW: 30818.9 Da    PI: 9.3984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0645genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.86e-063659225
                 -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                 k ++C  f+ t  C++G++C+F H
  Gh_D07G0645 36 KSKPCTKFFSTAGCQFGESCHFLH 59
                 7789******************** PP
2zf-CCCH25.62.2e-08100125227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  kt+lC+ f+    Ck+Gd+C+FaHg+
  Gh_D07G0645 100 KTRLCNKFSSPEGCKFGDKCHFAHGE 125
                  8***********************96 PP
3zf-CCCH38.22.4e-12262286126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt+lC++fa+ G C +G+rC+FaHg
  Gh_D07G0645 262 YKTKLCDNFAK-GSCTFGERCHFAHG 286
                  9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.83461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.1083462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-53561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.434259No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-1397129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.58298126IPR000571Zinc finger, CCCH-type
SMARTSM003560.005398125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-898129IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6100125IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.39E-14162238IPR004088K Homology domain, type 1
SMARTSM003222.8E-12167237IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.1E-16168237IPR004088K Homology domain, type 1
PROSITE profilePS5008414.508168232IPR004088K Homology domain, type 1
PfamPF000131.4E-11170234IPR004088K Homology domain, type 1
CDDcd001051.72E-14170232No hitNo description
Gene3DG3DSA:4.10.1000.102.3E-16257292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9260291IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-8261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.558261288IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9262286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDTRKRGRRE AGFNANGGIK KSKPELESLS TGVGSKSKPC TKFFSTAGCQ FGESCHFLHY  60
VPGGYNAVSQ MMNLAPAVQP ASRNVAATAA IPHGSASAVK TRLCNKFSSP EGCKFGDKCH  120
FAHGEWELGT PIAPSLDDPR SMAPLPGRMG SRMEPPPPSG PAATFGASAT AKISVDASLA  180
GAIIGKGGVH SKQICRQTGA NLSIREHESD PSLRNIELEG SFEQIKEASA MVRELISSLG  240
PVPGPAKTAG AHGGQGHPGS NYKTKLCDNF AKGSCTFGER CHFAHGAAEL RKSVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.97910.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744340.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8NZN80.0A0A1U8NZN8_GOSHI; zinc finger CCCH domain-containing protein 14-like
STRINGGorai.001G072800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-69C3H family protein