PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0660

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 358aa MW: 41164.9 Da PI: 7.2148

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0660	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.7	7.1e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gh_D07G0660 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.077	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.82E-26	2	82	No hit	No description
SuperFamily	SSF55455	2.22E-25	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAK YEMTKEVSRF 120 RAQLAEVHKR LSYWSNPDKI DNIEHLRQME DSLRESIERV RIHKENFGKH HLMSLECCNQ 180 FQNRIPLSVM IGAVQEAQPV MWLPNNENHH TLLHNELNFL PHRDAECSTD CSLAGYSGFF 240 GSGKQTEISS SGQVDNVVQE CNALNELGSN ACLNLEPGEQ YFYQPYSASN YQDDEKLKTE 300 MEVNLQGNPV VNQVISNFEI PRPMYNNGHQ AWVLSSGPCG IAMFDGNSYH QFLMMNTL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE  60
RSNIEEVIVK FAQLTPQERA KRKLESLEAL KKTFMKLDHD LNIHDFLGAK YEMTKEVSRF  120
RAQLAEVHKR LSYWSNPDKI DNIEHLRQME DSLRESIERV RIHKENFGKH HLMSLECCNQ  180
FQNRIPLSVM IGAVQEAQPV MWLPNNENHH TLLHNELNFL PHRDAECSTD CSLAGYSGFF  240
GSGKQTEISS SGQVDNVVQE CNALNELGSN ACLNLEPGEQ YFYQPYSASN YQDDEKLKTE  300
MEVNLQGNPV VNQVISNFEI PRPMYNNGHQ AWVLSSGPCG IAMFDGNSYH QFLMMNTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-15	1	92	1	90	MEF2C
5f28_B	9e-15	1	92	1	90	MEF2C
5f28_C	9e-15	1	92	1	90	MEF2C
5f28_D	9e-15	1	92	1	90	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236449	0.0	HM236449.1 UNVERIFIED: Gossypium hirsutum MADS33-like mRNA, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012469934.1	0.0	PREDICTED: MADS-box transcription factor 57-like isoform X3
Swissprot	Q7X9I0	1e-102	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A2P5S409	0.0	A0A2P5S409_GOSBA; Uncharacterized protein
STRING	Gorai.001G074200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	3e-95	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]