PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0951
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 246aa    MW: 27391.6 Da    PI: 6.2443
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0951genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-201877357
                 --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++tkeq+ +Le+l+ +  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Gh_D07G0951 18 SRWNPTKEQISILESLYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 77
                 6*****************99**************************************97 PP
2Wus_type_Homeobox115.33e-371779365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQi iLe+ly +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
        Gh_D07G0951 17 DSRWNPTKEQISILESLYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 79
                       68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8351378IPR001356Homeobox domain
SuperFamilySSF466891.07E-121583IPR009057Homeodomain-like
SMARTSM003891.9E-61582IPR001356Homeobox domain
PfamPF000463.5E-181877IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-81877IPR009057Homeodomain-like
CDDcd000864.07E-71979No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGGNMDTSG DGGTTGDSRW NPTKEQISIL ESLYLQGLRT PSADQIQQIT SRLKAYGSIE  60
GKNVFYWFQN HKARQRQKQK KQNLAYINRY LYWTTQPVYP PPPPHGINVA CGPHFLPQVE  120
LGIYPQTQCP KVLFPGGDER RERPAKMGKP LQRDYNTMLP HAENFEGLLN ISNHETLELF  180
PLHPTGLLET KETLMSPPGS TNSAGISIIT PSISCETTAG IDEEGSGTGE QQFFDFFTSQ  240
GSSARD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279932e-34HQ527993.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GID8O simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747713.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A1U8PBM40.0A0A1U8PBM4_GOSHI; WUSCHEL-related homeobox 2-like
STRINGGorai.001G108900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-36WUSCHEL related homeobox 2