PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0990
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 181aa    MW: 20053 Da    PI: 6.6792
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0990genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000322749123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C+ C++ Fs+   L  H++ H
  Gh_D07G0990 27 YDCTFCKRGFSNAQALGGHMNIH 49
                 88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-62554No hitNo description
Gene3DG3DSA:3.30.160.601.1E-42553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.3442754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
METDQPAPEN PDKASSDEQG ASPARSYDCT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQPS  60
PTRETTATTQ QSNFDISTII PSYSHTPSSH GKWRWVLQDD GADARTDKTS DHIVGSQIRQ  120
LPLFDEKPSK SDQNPRSQVQ EGLEKGFSST QPPLGSELDL ELRLGPEPQD SSPPKTTKKF  180
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747287.11e-132PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1U8P7U01e-131A0A1U8P7U0_GOSHI; transcriptional regulator TAC1-like
STRINGGorai.001G112700.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-18C2H2 family protein