PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1078

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 469aa MW: 52333.1 Da PI: 7.662

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1078	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.6e-10	165	206	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAA++sR+RKka++++Le +L++ ++L Gh_D07G1078 165 AKTLRRLAQNREAAKKSRLRKKAYVQQLESSRIKLTQLEQEL 206 6889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-4	162	220	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.151	164	208	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	165	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-6	166	209	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.1E-7	167	210	No hit	No description
PROSITE pattern	PS00036	0	169	184	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.5E-29	247	322	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIVLQ GAKANLLTGR TAATLEMFPS 60 WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS PISKKASSSY HQAFDQQNLQ 120 LQQQQQQEMA SDPSRTGTSL NQSAPIVKPL QEKKRASTSE KQLDAKTLRR LAQNREAAKK 180 SRLRKKAYVQ QLESSRIKLT QLEQELQRAR SQGLLLGSSG GGVGNISSGA VICDMEYARW 240 LEDDERHMSE LRTGLHSNLS DTDLRLMVNT YLSHYDENFR LKGMAAKFDV FHLLTGMWTS 300 PAERCFLWMG GFRPSELIKI LISQLDPLTE QQLMGICSLQ HSSQQAEEAL SQGLEQLQQS 360 LIDTVAGGPA IDGMQQMAIA LSKLANLEGF VRQADNLRQQ TLHQLPRILT VRQAARCFLV 420 IGEYYGRLRA LSSLWASRPR GRLMSDEQPC QTTTELQMVQ PSQSHFSHF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MANHHIPYAL LHGMNVPTSF INQEGSAFDF GELEEAIVLQ GAKANLLTGR TAATLEMFPS  60
WPMRYQQTPG SSKSGGESTD SGSALNTISS KTENQFEPDS PISKKASSSY HQAFDQQNLQ  120
LQQQQQQEMA SDPSRTGTSL NQSAPIVKPL QEKKRASTSE KQLDAKTLRR LAQNREAAKK  180
SRLRKKAYVQ QLESSRIKLT QLEQELQRAR SQGLLLGSSG GGVGNISSGA VICDMEYARW  240
LEDDERHMSE LRTGLHSNLS DTDLRLMVNT YLSHYDENFR LKGMAAKFDV FHLLTGMWTS  300
PAERCFLWMG GFRPSELIKI LISQLDPLTE QQLMGICSLQ HSSQQAEEAL SQGLEQLQQS  360
LIDTVAGGPA IDGMQQMAIA LSKLANLEGF VRQADNLRQQ TLHQLPRILT VRQAARCFLV  420
IGEYYGRLRA LSSLWASRPR GRLMSDEQPC QTTTELQMVQ PSQSHFSHF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269\|PubMed:20805327}.
Uniprot	TISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269\|PubMed:20805327}.

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745098.1	0.0	PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1U8P425	0.0	A0A1U8P425_GOSHI; transcription factor HBP-1b(C38)-like isoform X1
STRING	Gorai.001G122100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]