PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1150
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 265aa    MW: 29472.9 Da    PI: 7.1348
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1150genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.11.1e-393798263
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                 +e+alkcprC+s ntkfCyynnyslsqPryfCk+CrryWtkGG lrnvPvGgg+rknk+sss
  Gh_D07G1150 37 PEEALKCPRCESINTKFCYYNNYSLSQPRYFCKSCRRYWTKGGNLRNVPVGGGCRKNKRSSS 98
                 7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-302395IPR003851Zinc finger, Dof-type
PfamPF027016.4E-343995IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1614195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPSRGLHQE MGNPFSENMV VNSKGQQQQE RKARPQPEEA LKCPRCESIN TKFCYYNNYS  60
LSQPRYFCKS CRRYWTKGGN LRNVPVGGGC RKNKRSSSKR TQDHAFTPST NPLITPHHHP  120
IPPLTYDIDT NDLSLAFATV QKQSTSGQQL GFDDHDGDLS IFGNPSFNGN ALTSSFLGNH  180
GNLQSYCYDN IGMGGATTGL NGETMLPYNN QEMIDSTMAM GQDSENRVLW GLPWQLIAAD  240
NNMVGLGGLD LVRDNWNGLL NTPLM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.160030.0boll
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745239.10.0PREDICTED: dof zinc finger protein DOF2.1-like
SwissprotQ8LE432e-49DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLA0A1U8P4U70.0A0A1U8P4U7_GOSHI; dof zinc finger protein DOF2.1-like
STRINGGorai.001G129500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-46Dof family protein