PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1166

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YC

Protein Properties

Length: 217aa MW: 24789.1 Da PI: 10.2815

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1166	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	42.2	1.8e-13	111	200	11	100
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 e++++ k ++P+ rik+i+k+++ +s ++ l+ ka elf+ ++ + + + ++++l ++++v + + +dfl d vp+++ Gh_D07G1166 111 EEEEEAKVCKFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLEKFCEDGYKCSIKDRKKSLSYKHLSTVVHEQKRYDFLSDYVPQKK 200 677788999**************9***********************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.54E-17	118	198	IPR009072	Histone-fold
Pfam	PF00808	3.4E-14	120	183	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.6E-22	121	198	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MASSSKKPKE ENRNKKNKEK SNRTADKDKK KSIKKPEKKA SASKIPTKSK PNPESKPDKS 60 KNQSSNGIPV KSQVIADPSS SSESEPQENR NNSHKNVKPY SKRKRKEEVD EEEEEAKVCK 120 FPMNRIKRII KTEDSHMAVS QDVVFLVNKA AELFLEKFCE DGYKCSIKDR KKSLSYKHLS 180 TVVHEQKRYD FLSDYVPQKK KAEDALKVMN LAETGEG

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20854	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745372.1	1e-153	PREDICTED: DNA polymerase epsilon subunit C-like
TrEMBL	A0A1U8P2E5	1e-152	A0A1U8P2E5_GOSHI; DNA polymerase epsilon subunit C-like
STRING	Gorai.001G131300.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	6e-32	nuclear factor Y, subunit C10