PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1320
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 474aa    MW: 54360.9 Da    PI: 6.2077
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1320genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.36e-4061302128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                    GfrF P dee+++++Lkkk+ g++ ++ + i+evd++k+ePw+Lp +  v+++  ew fF k +k ++  +++ r+t++gyWk+tg d+++++ ++
  Gh_D07G1320   6 EIGFRFLPPDEEIISFFLKKKMMGDHKTT-RYIREVDLLKHEPWQLPaMsVVQSTYPEWLFFYKLNKISQ--RKNDRSTNDGYWKSTGADRPITC-GD 99 
                  68***********************9777.89***************5334555555**99999988764..58889******************.99 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +l+g+kktLvfykgr+p+g +tdWvmhe+r+
  Gh_D07G1320 100 SLIGTKKTLVFYKGRTPNGLRTDWVMHEFRA 130
                  9****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-414135IPR003441NAC domain
PROSITE profilePS5100541.3645146IPR003441NAC domain
PfamPF023653.5E-197129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDNVLEIGFR FLPPDEEIIS FFLKKKMMGD HKTTRYIREV DLLKHEPWQL PAMSVVQSTY  60
PEWLFFYKLN KISQRKNDRS TNDGYWKSTG ADRPITCGDS LIGTKKTLVF YKGRTPNGLR  120
TDWVMHEFRA TADSLPPNAQ CTRFAASSSQ DNAVGATSME SNSTHFDIAL RMYMEEEGMF  180
DSDLLPSGGL HCFPSSSAIF NNDQSRIEER FSLEDFDYLQ SDDLFDDENE WQRQFVNIDD  240
EMEFYGALFH NPDERTNAEA EYRDNAWVKK HYRVVTHDQI VHMSDGTCHG HSEGLNQRRM  300
ETGVHHDEVL IMDSGVESAT VTAYEINCLE LVQEERSVNS RACKSEYKPI SHKSAVLRHP  360
RRVQLQDKSL GKAVSRDKTR ESGIRGPAVQ PIQDKKSILQ ANEGPKMDRD WNTKLIVNWR  420
SEGSSGSSRK NSFNFVEMSQ LSCKADPALR FGFHDLALPL VLQPMKPVKS QDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27512915139Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.8680.0boll| embryo| leaf| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472500.0KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480538.10.0PREDICTED: protein NTM1-like 9
TrEMBLW6JAQ80.0W6JAQ8_GOSHI; NAC domain protein NAC73
STRINGGorai.001G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-39NAC transcription factor-like 9