PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1484
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 237aa    MW: 26113.9 Da    PI: 7.5524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1484genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1866116256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Gh_D07G1484  66 TYRGVRIRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALAIKGH 116
                  69****888.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-202219IPR017392AP2/ERF transcription factor ERF/PTI6
SMARTSM003806.8E-3666129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3166124IPR001471AP2/ERF domain
PROSITE profilePS5103222.73466123IPR001471AP2/ERF domain
PfamPF008471.1E-1266116IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2166124IPR016177DNA-binding domain
PRINTSPR003674.0E-106778IPR001471AP2/ERF domain
CDDcd000183.42E-3067123No hitNo description
PRINTSPR003674.0E-1089105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSTTASTSTS SSTGFSFPGF RKNKKTSKNS VAPQESKKAG DYSEENGNGK KKRGMISEDG  60
GSKHPTYRGV RIRSWGKWVS EIREPRKKSR IWLGTYSTAE MAARAHDVAA LAIKGHKAYL  120
NFPQLAKELP RPASTSPKDI QAAASQAASS TFLETRRCTI EDEAGPNQEE IPVSHSSFTS  180
AASDTLQESS TSLFTHDDDT VFDLPDLMID CSYSSAWQIC AVDAVFRTEE PFVWDYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1861124973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747768.11e-177PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ73e-60ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8PBT71e-176A0A1U8PBT7_GOSHI; ethylene-responsive transcription factor ERF034-like
STRINGGorai.001G176500.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.14e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]