PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1657
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SAP
Protein Properties Length: 463aa    MW: 50642.6 Da    PI: 6.9777
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1657genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP695.84.9e-21224632455
          SAP   2 ssssssssseseegseggeggdass................gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstw 83 
                  ssssss ss+s++ + +g+g ++++                g++egps +r+r  ne+wp Pf+e l ++vaidasrs+Grlaaa a+a+vfqvcstw
  Gh_D07G1657   2 SSSSSSASSSSSSEDGNGNGNGNGNgngngngnghgarrggGDFEGPSLTRRRGNNEIWPGPFVEDLVVKVAIDASRSIGRLAAAGAIAHVFQVCSTW 99 
                  555444433333322222222222233668899***************************************************************** PP

          SAP  84 ravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrl 181
                  +avsrsd lw+rlt+ iW rt++++ tW+eey+yrh+t++nfr +r+ +vtl+fdp+ vd    +d l+Crcl+lsd++la+Gf+dG+vrlfdl+trl
  Gh_D07G1657 100 QAVSRSDPLWHRLTSVIWGRTHRMHTTWHEEYVYRHQTSQNFRLGRSVHVTLHFDPTGVDI---PDGLTCRCLTLSDTHLACGFTDGTVRLFDLATRL 194
                  *********************************************************8888...689******************************* PP

          SAP 182 hvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWdaeteel 279
                  hv tf+p h+dr+GrfsravsGi+i+d r++fatldGdi+va+i+g  + +arra++G++v+dG lvdf+G+grWwvGlyaGvpGra hiWd++teel
  Gh_D07G1657 195 HVATFHPLHGDRFGRFSRAVSGIIITDPRIIFATLDGDIYVAIIEG--QHQARRAHIGNIVDDGSLVDFTGCGRWWVGLYAGVPGRAIHIWDGNTEEL 290
                  *********************************************9..78************************************************ PP

          SAP 280 vfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleev 377
                  v+v  +ltd e+++GWhmltelte++Grvrvt++e+avaCts + +v+dlrn+   l+++e++rG+iv sld++nea+++vd+rG a+vrr+++lee+
  Gh_D07G1657 291 VYVNTTLTDRESLRGWHMLTELTEAIGRVRVTSQESAVACTSNKYMVLDLRNPAFPLHDRESARGFIVNSLDTNNEAFIIVDNRGRAIVRRADTLEEL 388
                  ************************************************************************************************** PP

          SAP 378 crfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                  crf+ r   ++++gC+n+gyal++a+gv+rvW ie+ + ylys+ e +g vna+  ddrhva++ss++tihl+dfgaq
  Gh_D07G1657 389 CRFNTR--LGNLMGCMNLGYALLCAAGVIRVWGIEHGQ-YLYSFGENIGAVNAMAGDDRHVAAASSNSTIHLWDFGAQ 463
                  ****99..89*************************966.*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.37E-589137IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.1E-589154No hitNo description
SMARTSM0032010144189IPR001680WD40 repeat
SuperFamilySSF509783.84E-16164298IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.7E-12168460IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.84E-16353459IPR017986WD40-repeat-containing domain
PROSITE profilePS502948.967413463IPR017986WD40-repeat-containing domain
SMARTSM003200.82422459IPR001680WD40 repeat
PROSITE patternPS006780446460IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MSSSSSSASS SSSSEDGNGN GNGNGNGNGN GNGNGHGARR GGGDFEGPSL TRRRGNNEIW  60
PGPFVEDLVV KVAIDASRSI GRLAAAGAIA HVFQVCSTWQ AVSRSDPLWH RLTSVIWGRT  120
HRMHTTWHEE YVYRHQTSQN FRLGRSVHVT LHFDPTGVDI PDGLTCRCLT LSDTHLACGF  180
TDGTVRLFDL ATRLHVATFH PLHGDRFGRF SRAVSGIIIT DPRIIFATLD GDIYVAIIEG  240
QHQARRAHIG NIVDDGSLVD FTGCGRWWVG LYAGVPGRAI HIWDGNTEEL VYVNTTLTDR  300
ESLRGWHMLT ELTEAIGRVR VTSQESAVAC TSNKYMVLDL RNPAFPLHDR ESARGFIVNS  360
LDTNNEAFII VDNRGRAIVR RADTLEELCR FNTRLGNLMG CMNLGYALLC AAGVIRVWGI  420
EHGQYLYSFG ENIGAVNAMA GDDRHVAAAS SNSTIHLWDF GAQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6194521e-55JX619452.1 Gossypium hirsutum clone NBRI_GE65288 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747780.10.0PREDICTED: transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-171SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A1U8P9F50.0A0A1U8P9F5_GOSHI; transcriptional regulator STERILE APETALA-like
STRINGGorai.001G191800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110182634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-171SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]