PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1671
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 531aa    MW: 59495.4 Da    PI: 6.3264
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1671genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.88.3e-1411615311374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++L++cA+avs++dl  aq+l+ +l+ ++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf+++ a
  Gh_D07G1671 161 LKHVLVSCAKAVSDNDLLTAQWLMDELRRMVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGYMSA 255
                  689******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +++rL+k+A+ ++vpfefn+ +a +  +++ e+L
  Gh_D07G1671 256 NGAIAEAMKDEDRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVAKRLSKLAALFKVPFEFNA-AAMSGCEVQQEHL 352
                  ***************************************************998899999************************.899999******* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn++++lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F+ rf e+l+yy+a+f+s++++lpre++eri+vE+++l+r
  Gh_D07G1671 353 QVQPGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFHETLNYYTAMFESIDVTLPREHKERINVEQHCLAR 450
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++vn++aceg er+erhe ++kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g l+lgW++r Lv+ +aW+
  Gh_D07G1671 451 DVVNIIACEGPERVERHELMGKWRSRFRMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGGLFLGWMNRDLVASCAWK 531
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.605135512IPR005202Transcription factor GRAS
PfamPF035142.9E-138161531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MQASQQHRSS VMASRLFPQV KEEVEPCSFP QFPAIDRSFC YSDSSHGSHF SVKNSHEPYC  60
TLESSSARGS YTVYNSSSNG SPMSQQESQS NMSDLHHSPD NTYSSPISGS CITDDVSDLK  120
GKLRELETVM LGPDCDIINS TISPEMDSWR LVTDAVSRRD LKHVLVSCAK AVSDNDLLTA  180
QWLMDELRRM VSVSGEPIQR LGAYMLEGLV ARLASSGSSI YKALRCKEPA SAELLSYMHI  240
LYEVCPYFKF GYMSANGAIA EAMKDEDRVH IIDFQIGQGS QWITLIQAFA ARPGGPPHIR  300
ITGIDDSTSA YARGGGLNIV AKRLSKLAAL FKVPFEFNAA AMSGCEVQQE HLQVQPGEAL  360
AVNFAFMLHH MPDESVSTEN HRDRLLRLVK SLSPKVVTLV EQESNTNTAP FFPRFHETLN  420
YYTAMFESID VTLPREHKER INVEQHCLAR DVVNIIACEG PERVERHELM GKWRSRFRMA  480
GFTPYPLSSL VNATIKTLLE NYCDRYRLEE RDGGLFLGWM NRDLVASCAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-621655318375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.165780.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486017.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0D2Q1180.0A0A0D2Q118_GOSRA; Uncharacterized protein
STRINGGorai.001G192800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]