PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1723

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 213aa MW: 22850.5 Da PI: 4.1576

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1723	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	58	79	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F+++ H+++H Gh_D07G1723 58 TCYVCSKNFTSWKAVFGHLKSH 79 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.764	57	84	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	59	79	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSIDDADETG IDDPKGQGSS SIKRGSTTDV AIQIGSGSGS GSNARKKREM EIPRGEPTCY 60 VCSKNFTSWK AVFGHLKSHQ RETPGALPPP TFTPTEGSPE NNNDDETNPR EQLAPTLLNL 120 ALETMQKMSE DSNMSVVVAG EEASSSGKGR GRGKGRGRGR GRRGLDIDLN QPKTSFLLDL 180 NEPPPPDQDD DDEDDDDDDD DGAAADDDEN DKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	160	RGKGRGRGRG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747471.1	1e-153	PREDICTED: uncharacterized protein LOC107956271
TrEMBL	A0A1U8P8E0	1e-152	A0A1U8P8E0_GOSHI; uncharacterized protein LOC107956271
STRING	Gorai.001G198600.1	1e-149	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35700.1	1e-13	C2H2 family protein