PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 417aa    MW: 46663.9 Da    PI: 8.1684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1817genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.82.4e-104354161374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++ ss++l++a+++L ++s las +gd+mqRl a f+ ALa rl++ +++l k l+ ++ ++  +++  +a+ lf  v+P+l fs+ + 
  Gh_D07G1817  35 LIQLLLTCAKHASSSNLHRADECLRQISLLASVSGDSMQRLSAWFASALAVRLVKRWPGLHKVLNYTQLPK--QDQLGQAQPLFGRVCPYLGFSYAII 130
                  689*****************************************************************995..777788999**************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   +++ +a+ ge+ +H +D++ +    W++Ll+++++  +g+p+l++T +++    +k  lee+g rL k Ae+lg+pf+f +l   +l +l+l++L v
  Gh_D07G1817 131 SRTLIKAMTGERVIHLVDLGSGDANLWIPLLRSFSCLLDGQPHLKVTCMNA----NKAILEELGPRLVKEAEALGLPFQFAPL-NVSLRELTLDKLGV 223
                  ***************************************************....99*************************5.889*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                  k+gEala  ++l+lh+ll               +  + +++  ++L++++s sPk++ +ve+eadhn +++++rf+e l+yysa+fds+ a+++ ++ 
  Gh_D07G1817 224 KSGEALAFISILNLHSLLaeddsvdahfshnkTNGIKDSKQMFRFLSTIRSSSPKLFFLVEKEADHNLNKLVDRFVEGLHYYSAVFDSVGATFGGNTs 321
                  **************************999976333444446778*********************************************888876655 PP

         GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +er ++E++ +g+ei+n+vaceg er+erhe++++W  r+++aGFkpv + ++ +++ak +++ ++ +gy++ +e++sl+++W+drpL++vSaW+
  Gh_D07G1817 322 sRERLVLEEM-FGKEIENIVACEGVEREERHERYGRWMVRFGQAGFKPVMMWHESTEDAKQMVEACGRNGYKIVNERASLMICWHDRPLYAVSAWT 416
                  7999999999.************************************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.8619396IPR005202Transcription factor GRAS
PfamPF035148.3E-10235416IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MMSSSPKPEV TLSLALSPGS TLQEVVKPQE RGVRLIQLLL TCAKHASSSN LHRADECLRQ  60
ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKVLNY TQLPKQDQLG QAQPLFGRVC  120
PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN  180
ANKAILEELG PRLVKEAEAL GLPFQFAPLN VSLRELTLDK LGVKSGEALA FISILNLHSL  240
LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSPKLF FLVEKEADHN LNKLVDRFVE  300
GLHYYSAVFD SVGATFGGNT SSRERLVLEE MFGKEIENIV ACEGVEREER HERYGRWMVR  360
FGQAGFKPVM MWHESTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-482741611379Protein SCARECROW
5b3h_A2e-482741610378Protein SCARECROW
5b3h_D2e-482741610378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448371.10.0PREDICTED: scarecrow-like protein 3
TrEMBLA0A0D2M1880.0A0A0D2M188_GOSRA; Uncharacterized protein
STRINGGorai.001G207600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2066156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-104scarecrow-like 3