![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Gh_D07G1817 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
| Family | GRAS | ||||||||
| Protein Properties | Length: 417aa MW: 46663.9 Da PI: 8.1684 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 340.8 | 2.4e-104 | 35 | 416 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l++lLl+cA++ ss++l++a+++L ++s las +gd+mqRl a f+ ALa rl++ +++l k l+ ++ ++ +++ +a+ lf v+P+l fs+ +
Gh_D07G1817 35 LIQLLLTCAKHASSSNLHRADECLRQISLLASVSGDSMQRLSAWFASALAVRLVKRWPGLHKVLNYTQLPK--QDQLGQAQPLFGRVCPYLGFSYAII 130
689*****************************************************************995..777788999**************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
+++ +a+ ge+ +H +D++ + W++Ll+++++ +g+p+l++T +++ +k lee+g rL k Ae+lg+pf+f +l +l +l+l++L v
Gh_D07G1817 131 SRTLIKAMTGERVIHLVDLGSGDANLWIPLLRSFSCLLDGQPHLKVTCMNA----NKAILEELGPRLVKEAEALGLPFQFAPL-NVSLRELTLDKLGV 223
***************************************************....99*************************5.889*********** PP
GRAS 197 kpgEalaVnlvlqlhrll..............desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
k+gEala ++l+lh+ll + + +++ ++L++++s sPk++ +ve+eadhn +++++rf+e l+yysa+fds+ a+++ ++
Gh_D07G1817 224 KSGEALAFISILNLHSLLaeddsvdahfshnkTNGIKDSKQMFRFLSTIRSSSPKLFFLVEKEADHNLNKLVDRFVEGLHYYSAVFDSVGATFGGNTs 321
**************************999976333444446778*********************************************888876655 PP
GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+er ++E++ +g+ei+n+vaceg er+erhe++++W r+++aGFkpv + ++ +++ak +++ ++ +gy++ +e++sl+++W+drpL++vSaW+
Gh_D07G1817 322 sRERLVLEEM-FGKEIENIVACEGVEREERHERYGRWMVRFGQAGFKPVMMWHESTEDAKQMVEACGRNGYKIVNERASLMICWHDRPLYAVSAWT 416
7999999999.************************************************************************************6 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 47.861 | 9 | 396 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 8.3E-102 | 35 | 416 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 417 aa Download sequence Send to blast |
MMSSSPKPEV TLSLALSPGS TLQEVVKPQE RGVRLIQLLL TCAKHASSSN LHRADECLRQ 60 ISLLASVSGD SMQRLSAWFA SALAVRLVKR WPGLHKVLNY TQLPKQDQLG QAQPLFGRVC 120 PYLGFSYAII SRTLIKAMTG ERVIHLVDLG SGDANLWIPL LRSFSCLLDG QPHLKVTCMN 180 ANKAILEELG PRLVKEAEAL GLPFQFAPLN VSLRELTLDK LGVKSGEALA FISILNLHSL 240 LAEDDSVDAH FSHNKTNGIK DSKQMFRFLS TIRSSSPKLF FLVEKEADHN LNKLVDRFVE 300 GLHYYSAVFD SVGATFGGNT SSRERLVLEE MFGKEIENIV ACEGVEREER HERYGRWMVR 360 FGQAGFKPVM MWHESTEDAK QMVEACGRNG YKIVNERASL MICWHDRPLY AVSAWTC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3g_A | 2e-48 | 27 | 416 | 11 | 379 | Protein SCARECROW |
| 5b3h_A | 2e-48 | 27 | 416 | 10 | 378 | Protein SCARECROW |
| 5b3h_D | 2e-48 | 27 | 416 | 10 | 378 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_012448371.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
| TrEMBL | A0A0D2M188 | 0.0 | A0A0D2M188_GOSRA; Uncharacterized protein | ||||
| STRING | Gorai.001G207600.1 | 0.0 | (Gossypium raimondii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM20661 | 5 | 6 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G50420.1 | 1e-104 | scarecrow-like 3 | ||||




