PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1955

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 101aa MW: 11956 Da PI: 10.1803

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1955	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	53	94	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + RR++i +++ L++l+P + +k +Ka +L + ++Y++sLq Gh_D07G1955 53 KVRREKISERMKYLQDLVPGC----NKITDKAGMLNEIINYVQSLQ 94 78*****************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00025	2.8E-11	7	54	IPR006689	Small GTPase superfamily, ARF/SAR type
Gene3D	G3DSA:3.40.50.300	1.3E-5	9	49	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PRINTS	PR00328	1.7E-13	16	40	IPR006689	Small GTPase superfamily, ARF/SAR type
PRINTS	PR00328	1.7E-13	43	68	IPR006689	Small GTPase superfamily, ARF/SAR type
PROSITE profile	PS50888	13.186	43	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-13	44	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-5	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-13	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.00E-7	52	98	No hit	No description
Pfam	PF00010	1.2E-6	53	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005525	Molecular Function	GTP binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MTKCKSQQLR LVQHQPTQYP TLEELSIGII KFKAFDLGCH QIARRVWKDY YAKVRREKIS 60 ERMKYLQDLV PGCNKITDKA GMLNEIINYV QSLQRQVEVK K

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.11680	4e-65	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109875593	4e-65

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in transport from the endoplasmic reticulum to the Golgi apparatus. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX585276	4e-64	JX585276.1 Gossypium hirsutum clone NBRI_GE18804 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491357.1	2e-63	PREDICTED: GTP-binding protein SAR1-like isoform X1
Refseq	XP_012491366.1	2e-63	PREDICTED: GTP-binding protein SAR1-like isoform X2
Refseq	XP_012491372.1	2e-63	PREDICTED: GTP-binding protein SAR1-like isoform X2
Refseq	XP_012491379.1	2e-63	PREDICTED: GTP-binding protein SAR1-like isoform X2
Swissprot	P52885	3e-24	SAR1_TOBAC; GTP-binding protein SAR1
TrEMBL	A0A2P5S388	1e-68	A0A2P5S388_GOSBA; Uncharacterized protein
STRING	Gorai.001G223600.1	1e-62	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16325	3	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-24	cryptochrome-interacting basic-helix-loop-helix 1

Publications ? help Back to Top
Hanton SL, et al. Plant Sar1 isoforms with near-identical protein sequences exhibit different localisations and effects on secretion. Plant Mol. Biol., 2008. 67(3): p. 283-94 [PMID:18322804]