PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1984

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 222aa MW: 25513.1 Da PI: 8.7854

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1984	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86	5.6e-27	51	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gh_D07G1984 51 KYYIEYARRIGFMVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 140 69**************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.9E-25	51	140	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MVDVIQIKWD LDKEGGKADS SVEEKTAERE GSEILEPYVG MEFESEDDAK KYYIEYARRI 60 GFMVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTLGQ EKKPRPSARE GCKATILVKM 120 EKTGKWVVTR FEKEHNHPLM ITANGFNTTG DKDKKIEELT MELAHQEQLC SAYREKLFAF 180 INNVEKQTEE LSSKIEVIVD NIRKLEAERQ RFTHRSAGSL GL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.22381	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016746159.1	1e-160	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A1U8P7E1	1e-159	A0A1U8P7E1_GOSHI; protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBL	A0A2P5R1K2	1e-159	A0A2P5R1K2_GOSBA; Uncharacterized protein
STRING	Gorai.001G227800.1	1e-158	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-75	FAR1 family protein