PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G2184

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 28665.1 Da PI: 7.3618

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G2184	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.9	1.4e-17	67	119	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +q+++Le+ Fe +++ ++ +LAk lgL+ rq+ +WFqNrRa++k+ Gh_D07G2184 67 KRLNMDQVKALEKSFELRNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 119 56889**********************************************95 PP
2	HD-ZIP_I/II	121.2	5.3e-39	65	155	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+ +qvk+LE+sFe ++kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L++++++L+++l Gh_D07G2184 65 NKKRLNMDQVKALEKSFELRNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALHAQNKKLTAQLL 155 79*************************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.67E-18	48	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	60	120	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	63	124	IPR001356	Homeobox domain
CDD	cd00086	7.02E-14	66	121	No hit	No description
Pfam	PF00046	5.9E-15	66	119	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-19	67	128	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	100	116	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.7E-11	120	160	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAFPPHAFMF QTLHEDQNHF PSPYSLLPCP PQLFHGGVGK SHQEVHGHGD DDEYSDDDGS 60 HGGENKKRLN MDQVKALEKS FELRNKLEPG RKLQLAKDLG LKPRQIAIWF QNRRARWKNK 120 QLEKDYDALK KLYQTAKADN DALHAQNKKL TAQLLSLKAK DSNETRIKNE NEGSWCSNGS 180 ENNYDMNLAI RPAATMTQLL HGSSKPSLQC LKLDQVVQQD QSLACHMFNQ DGDEQQGFWP 240 WADQSIKFPL N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKNKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016749921.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT7-like
Swissprot	Q00466	8e-70	HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBL	A0A1U8PFC7	0.0	A0A1U8PFC7_GOSHI; homeobox-leucine zipper protein HAT7-like
STRING	Gorai.001G256300.1	1e-170	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24696	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-65	homeobox 3