PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2341
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 245aa    MW: 27824.9 Da    PI: 10.0304
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2341genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.32.6e-35141391128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlsk.k 96 
                  +p G+rF+Ptdeelvv+yLkkk+ + +l++ +vi+e+d+++++Pw+Lp  v   +++ yfFs+r  + +++k+++r ++ sgyWk+ gk+k++l++ +
  Gh_D07G2341  14 MPIGYRFRPTDEELVVHYLKKKALNLPLPA-SVIPEFDVFQTDPWSLPGDV---KEKRYFFSSRYGNDSNNKKRKRvVAGSGYWKSIGKEKPILASgT 107
                  699***************************.99***************554...4578******9999999999997888**************9967 PP

          NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++vg+++ L+f + +  + +k +W++h++rl
  Gh_D07G2341 108 NQVVGMRQALIFCERKPCTDTKPRWLLHQFRL 139
                  778**********99999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-4210164IPR003441NAC domain
PROSITE profilePS5100541.86814165IPR003441NAC domain
PfamPF023659.7E-2015139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGQRFVVNG GIKMPIGYRF RPTDEELVVH YLKKKALNLP LPASVIPEFD VFQTDPWSLP  60
GDVKEKRYFF SSRYGNDSNN KKRKRVVAGS GYWKSIGKEK PILASGTNQV VGMRQALIFC  120
ERKPCTDTKP RWLLHQFRLV GSADQTQMTK REWHGDWVVF KVIQRKRNAK KHGVICSNSQ  180
TTRAAAYMPS CIDFTVEDSS MFGPPQPTSP SSSEITEVSP NGLLDQEESS AAVITTFLHY  240
CMRKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-291217115171NO APICAL MERISTEM PROTEIN
1ut4_B1e-291217115171NO APICAL MERISTEM PROTEIN
1ut7_A1e-291217115171NO APICAL MERISTEM PROTEIN
1ut7_B1e-291217115171NO APICAL MERISTEM PROTEIN
4dul_A1e-291217115171NAC domain-containing protein 19
4dul_B1e-291217115171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.239530.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5893853e-39JX589385.1 Gossypium hirsutum clone NBRI_GE24075 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016673669.10.0PREDICTED: NAC domain-containing protein 83-like
RefseqXP_016723930.10.0PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A1U8ICZ10.0A0A1U8ICZ1_GOSHI; NAC domain-containing protein 83-like
STRINGGorai.001G274500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78742541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-40NAC domain containing protein 83