PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2433
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 235aa    MW: 27083.6 Da    PI: 6.4343
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2433genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.22.4e-20192234244
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                  +r+ W++eLH+rFvea++ LGG+e+AtPk+i++lm+v+gLt++
  Gh_D07G2433 192 NRRFWSSELHSRFVEALNMLGGNEVATPKQIRDLMQVEGLTID 234
                  6999*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.74E-8189235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-15190235IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-15191235IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNPNSVELSL SLKPLYVPKS LSSLFLDLSK IDNQYYKLSV LSDYIGKLEE ELARVQPLKH  60
LLPQCTLLLM EAIETLKVEF TNIKNNLKNN EKEGERETQK IISTCSATEE HYGNSQPCKE  120
KGNNMEGLMM AYKENSTWNC VGASSSSGKE KEVAAIEEYS WRNDETFYCN YDHHHHHHHH  180
LKPLTQAIWK NNRRFWSSEL HSRFVEALNM LGGNEVATPK QIRDLMQVEG LTIDQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6638851e-109JN663885.1 Gossypium hirsutum microsatellite DPL511 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747248.11e-160PREDICTED: uncharacterized protein LOC107955995
TrEMBLA0A2P5QAV61e-174A0A2P5QAV6_GOSBA; Uncharacterized protein
STRINGGorai.001G089800.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15410716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.13e-15G2-like family protein