PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2436
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 586aa    MW: 64712.1 Da    PI: 6.127
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2436genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73.1e-24199250153
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                  kpr++W+ eLH++Fv av+qL G ++AtPk+ilelm+v+ Lt ++v SHLQ +
  Gh_D07G2436 199 KPRIVWSAELHSKFVAAVNQL-GMKNATPKKILELMNVEKLTTQNVGSHLQAF 250
                  79*******************.9****************************87 PP
2Response_reg81.42.8e-27201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEE CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdf 97 
                   vl vdD+p+ + ll+++l++ +y +v+++ ++  al+ll+++++Dl+++D+ mp+mdG++ll+     e++lp+i+++a+g+ + + + +  Ga d+
   Gh_D07G2436  20 VLAVDDDPTCLLLLETLLRRCKY-NVTTTNQAITALKLLRQNKFDLVICDVHMPDMDGFKLLELVGL-EMDLPVIMLSANGDTNVVMKGITHGACDY 114
                   799********************.**************************************87754.558************************** PP

                   EESS--HHHHHH CS
  Response_reg  98 lsKpfdpeelvk 109
                   l Kp+ +eel +
   Gh_D07G2436 115 LLKPVRIEELNN 126
                   ********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.3E-1381561IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.8E-4217139No hitNo description
SMARTSM004484.3E-3118128IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.56E-3718141IPR011006CheY-like superfamily
PROSITE profilePS5011042.54119132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.6E-2520126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.69E-2521124No hitNo description
PROSITE profilePS5129411.56193255IPR017930Myb domain
SuperFamilySSF466895.2E-15197252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-23198250IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-20199250IPR006447Myb domain, plants
PfamPF002491.6E-5203248IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MRVERIINET NDEFPIGIRV LAVDDDPTCL LLLETLLRRC KYNVTTTNQA ITALKLLRQN  60
KFDLVICDVH MPDMDGFKLL ELVGLEMDLP VIMLSANGDT NVVMKGITHG ACDYLLKPVR  120
IEELNNIWQH VVRRKRFERK DWYNSDSQDK LRADSGEAVG MGSISNNGKL KKKRKDQDED  180
EERDENGHHN NEDPSIRKKP RIVWSAELHS KFVAAVNQLG MKNATPKKIL ELMNVEKLTT  240
QNVGSHLQAF IRTFSANSYD DPKKFRLYLK RISCAANQQV NIAAAVRMRS PNGLGNFHTL  300
AGSNQLHNAA FRSFPPRGVL GRLNTHAGLL IRGLPSPRTI RSGHGQSSVN SGNDQSKLQS  360
FVSGIHNANI LQGLPMSLEL DQGQTNNGVS HIGELPIADS TTVFPVSSSL IDATITGFSG  420
NPLLGVTSHS LMLEASSQQA SNSRDIVPAI GFRNENTLSD FAPLAPASNR ESNADLQCEP  480
IPINCNAGEL ISSAPQEWNS PYQSNVTPCS MNSSIPVSGT MVQFGLCLDQ NNSMDSDSIG  540
PSSFIDNSAM EQSIIDKEGY LMLEPWEQGS HIPYNIGLLE DLWELQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18195273164ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016747257.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A2P5Q3W80.0A0A2P5Q3W8_GOSBA; Uncharacterized protein
STRINGGorai.001G096700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2505534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12