PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G2473

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 258aa MW: 30062 Da PI: 6.1878

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G2473	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.9	2.2e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ kw+vtk+++eHnH+l+ Gh_D07G2473 78 EFYIAYGRHIGFTVRIHHNRRSRINNSVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGVKWVVTKFVKEHNHSLM 168 6****************************************99983333.244899******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-22	78	168	IPR004330	FAR1 DNA binding domain
Gene3D	G3DSA:1.20.1000.10	5.1E-4	172	248	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MENASSQGID SDESVRCLQV ENFDEQELVD HGISDNIDLC LGEVDKIIEE SSEGLPLLRN 60 AAEPYIGMEF KSRDAAREFY IAYGRHIGFT VRIHHNRRSR INNSVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GVKWVVTKFV KEHNHSLMSP GKVPWRGSTK 180 NLITEDEKDQ RIRELTQELN NEKQKCKRRC AAYEEQLRTI LKFVEEHTDQ LSKKVQDMVK 240 NISELEEERL EDSDCRYV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745774.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U8P6C0	0.0	A0A1U8P6C0_GOSHI; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2P5SFR6	0.0	A0A2P5SFR6_GOSBA; Uncharacterized protein
STRING	Gorai.N002500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-37	FAR1 family protein