PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2492
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 123aa    MW: 13772.3 Da    PI: 6.2508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2492genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.93.3e-1024601456
          AP2 14 rWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 r+v  Ir     g+r+r +lg+f t eeAa+a+++a+ +++g+
  Gh_D07G2492 24 RFV--IRR----GIRTRLWLGTFKTVEEAARAYDRAAFAFRGH 60
                 455..444....467*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.775167IPR001471AP2/ERF domain
SMARTSM003808.5E-132173IPR001471AP2/ERF domain
CDDcd000186.26E-182768No hitNo description
PfamPF008471.2E-63060IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-123268IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-173268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MGWKMGEFNT GESAGDHGES SQPRFVIRRG IRTRLWLGTF KTVEEAARAY DRAAFAFRGH  60
SAILNFPNEF QCQNPSFPAS SSCTSVGRLN PQRGGGSEVI EFEYLDNKLL EDLLETQQNM  120
HGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-153410939114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012440091.16e-69PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-22ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2P5PV036e-83A0A2P5PV03_GOSBA; Uncharacterized protein
STRINGGorai.001G252700.15e-58(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-15ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]