PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0121

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 275aa MW: 30808.2 Da PI: 7.7437

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0121	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	128.2	2.3e-40	38	99	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++sss Gh_D08G0121 38 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNRRSSS 99 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.4E-34	40	96	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-26	41	94	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.581	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MANTKIAIVQ EMPNPTLGNM MVCTKGNEQQ ERKPRPQPEQ ALKCPRCDST NTKFCYYNNY 60 SLSQPRYFCK SCRRYWTKGG TLRNVPVGGG CRKNRRSSSS SSSSSTSSKR SQDQLLMPSN 120 TNLPPIDTSE LSLAIARLQK QANVHLGFDE NELPVLGNPN SFGLLGNQNH FQGFYNYGFE 180 NSGGETMMLP YNNDEEIISD ATIRTASNGM VAAMKQEVVS DGNKSDENQN QWGLQWQLNG 240 DHGNNYYNMV DFDSVRENWS GLSSTWHGLL NSPLM

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393984	1e-135	GQ393984.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0949 SSR marker CGR6147 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012472897.1	0.0	PREDICTED: dof zinc finger protein DOF2.1
TrEMBL	A0A0D2QXB3	0.0	A0A0D2QXB3_GOSRA; Uncharacterized protein
STRING	Gorai.004G012700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	4e-40	Dof family protein