PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0157
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family RAV
Protein Properties Length: 350aa    MW: 39735.3 Da    PI: 8.8997
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0157genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-083881453
          AP2  4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                 kG+    ++g W A+I+       + +r++lg+f +++eAa a++ a+  l
  Gh_D08G0157 38 KGIV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAALAYDSAAIGL 81
                 5553.445788****999......44********************99755 PP
2B3841.4e-26151247184
                  EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                  f+k+ltpsdv+k++rlv+pkk+a +h                 +   e+++l+++d+s + W+++++y+k+s+++v+t+GW++Fvk+++Lke+D + F
  Gh_D08G0157 151 FQKELTPSDVGKLNRLVIPKKHAVKHfphiendhqtfttA---NggcEDVELVFYDTSMKMWRFRYCYCKSSQSFVFTRGWNRFVKDKKLKEKDAIAF 245
                  99*************************9887655555551...0555899************************************************ PP

                  EE CS
           B3  83 kl 84 
                  + 
  Gh_D08G0157 246 YT 247
                  93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-193593No hitNo description
PROSITE profilePS5103215.7783691IPR001471AP2/ERF domain
SMARTSM003801.5E-153697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-143692IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-133793IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.106.2E-31149251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-27150250IPR015300DNA-binding pseudobarrel domain
CDDcd100175.07E-24150246No hitNo description
SMARTSM010199.6E-18151257IPR003340B3 DNA binding domain
PfamPF023628.2E-24151247IPR003340B3 DNA binding domain
PROSITE profilePS5086311.66151269IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAATKTSRSG GGSGGDDYMF RASKRLKTET SGGLARFKGI VPQQNGHWGA QIYANHQRIW  60
LGTFKSENEA ALAYDSAAIG LRIGDPHRNF PWSYDNIQEP NFQNLHTTRD ILNMIKSGSY  120
QSKYADYTKS NANHNKNTIH NDTKFAWQQL FQKELTPSDV GKLNRLVIPK KHAVKHFPHI  180
ENDHQTFTTA NGGCEDVELV FYDTSMKMWR FRYCYCKSSQ SFVFTRGWNR FVKDKKLKEK  240
DAIAFYTCEC TGEIEHGRGF FLIDVNYNGG DDENGGRIDV FKRLGSSSVL HHHQGELHVG  300
LELNLGTNFY CNLDEKHNEN GEEQGLSGLK SSSSHSVKEK RITLFGARIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2814824511100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472976.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P53e-94RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0D2QXJ00.0A0A0D2QXJ0_GOSRA; Uncharacterized protein
STRINGGorai.004G018300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2452634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-96RAV family protein