PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0309

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 891aa MW: 99975 Da PI: 8.0082

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0309	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.5	4.5e-113	428	810	1	360
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaal.............. 81 +++lL++cAe vs++d+ +a +lL+ ls +sp+gd+++Rl+ f++AL+ r++r + ++ + l+ s+ ++ s ++++ Gh_D08G0309 428 MRQLLISCAELVSQSDFPAAIRLLSILSSSSSPSGDSIERLVYQFVRALSLRINRlHHHHHHHGLAGSSLMRMMndISFPITSTagpvnydidpslqs 525 589**************************************************5444555555443333222234444444488888999998877 PP GRAS 82 ..klfsevsPilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172 +++++P+++f+hltaNqaIlea++ g++++HiiDfdi++G+QWp+L+qaLa+R+ ++pp+lRiTg g+ + + l++tg+rL kfA++l Gh_D08G0309 526 cyLSLNQITPFIRFAHLTANQAILEAIQvGQQCIHIIDFDIMHGVQWPPLMQALAERSanthHPPPMLRITGTGH----DLNILHRTGDRLFKFAQSL 619 5344*******************94669**********************88877899*****....9************** PP GRAS 173 gvpfefnvl...vak.rledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 g++fef++l ++ ++ + ++ ++ + p+EalaVn++l l+rll+++ + +L+ +k l+P+vv+v+e+ea+hn++ Fl+rf+eal+yy+ Gh_D08G0309 620 GLRFEFHPLlvlNEDpTWIATNFtSMVTILPDEALAVNCMLYLQRLLKDDSRDI---RLFLHHMKALNPTVVTVAEREANHNHPLFLQRFVEALDYYT 714 ****96532223454555415668889************6665555...59*********************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvl 360 a+fdslea+lp++s+er vE+ ++greiv++va+eg++rrerhe+le+W+ l+++GF +vpls +a +qaklllr ++ s+gy+++ +++++l Gh_D08G0309 715 AIFDSLEATLPPNSRERLAVEQIWFGREIVDIVAAEGENRRERHERLETWEVILRSSGFINVPLSPFAHSQAKLLLRLHYpSEGYQLQIVNNCFFL 810 *******************************************************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF103473	6.28E-19	16	370	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.2E-6	17	221	No hit	No description
CDD	cd06174	3.71E-6	19	362	IPR020846	Major facilitator superfamily domain
Pfam	PF13347	2.8E-17	21	392	No hit	No description
PROSITE profile	PS50985	61.375	402	803	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-110	428	810	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 891 aa Download sequence Send to blast
MSNSIEDDSF SKPVGRWSVY CYGVGHMLND ITSACWFTYL LLFLTEIGLS SRDAAIVMLS 60 GQIADGLATI FFGELIDRFG HFKIWHGAGA ILVAVSFSSV FGGCIPCKLL SSFSAIVETV 120 SYSTFAAIFN VGWAATQVSH MSMVSCITLN STSRVVLASC RNAFTMVANL SLYGIAFIVF 180 EVIRAETRAD IENQYRWIAY LSIFIGCCFV GVFYLGTKEP RSKTGIHGDI HARISWTYWF 240 LKILYYQVAI VYMLTRLVLN VSQAYLAFYV IDDLQMAQSS KALVPAIIYI CSFVVSILLQ 300 EIAWKEQRLK AYYTAGGILW IFCGIAIILL PRRMSLFVYA ISIFIGIANA LMTVTAVSMQ 360 NVLIGQDLNG CAFVCGSLSF LDKISCGLTL FVLQSFHSSS PIVAGNYSTA SDLHHQHRQQ 420 RRQTPLKMRQ LLISCAELVS QSDFPAAIRL LSILSSSSSP SGDSIERLVY QFVRALSLRI 480 NRLHHHHHHH GLAGSSLMRM MNDISFPITS TAGPVNYDID PSLQSCYLSL NQITPFIRFA 540 HLTANQAILE AIQVGQQCIH IIDFDIMHGV QWPPLMQALA ERSANTHHPP PMLRITGTGH 600 DLNILHRTGD RLFKFAQSLG LRFEFHPLLV LNEDPTWIAT NFTSMVTILP DEALAVNCML 660 YLQRLLKDDS RDIRLFLHHM KALNPTVVTV AEREANHNHP LFLQRFVEAL DYYTAIFDSL 720 EATLPPNSRE RLAVEQIWFG REIVDIVAAE GENRRERHER LETWEVILRS SGFINVPLSP 780 FAHSQAKLLL RLHYPSEGYQ LQIVNNCFFL ERVRTVKVLR VEAALLHRAK TRGGRGGGWV 840 WLHCTHGHGR MTGSVPSIYL SIPSLDVTSP LLSSPLWSSV FFVESTQKVL I

Sequence ? help Back to Top

Protein Sequence Length: 891 aa Download sequence Send to blast

MSNSIEDDSF SKPVGRWSVY CYGVGHMLND ITSACWFTYL LLFLTEIGLS SRDAAIVMLS  60
GQIADGLATI FFGELIDRFG HFKIWHGAGA ILVAVSFSSV FGGCIPCKLL SSFSAIVETV  120
SYSTFAAIFN VGWAATQVSH MSMVSCITLN STSRVVLASC RNAFTMVANL SLYGIAFIVF  180
EVIRAETRAD IENQYRWIAY LSIFIGCCFV GVFYLGTKEP RSKTGIHGDI HARISWTYWF  240
LKILYYQVAI VYMLTRLVLN VSQAYLAFYV IDDLQMAQSS KALVPAIIYI CSFVVSILLQ  300
EIAWKEQRLK AYYTAGGILW IFCGIAIILL PRRMSLFVYA ISIFIGIANA LMTVTAVSMQ  360
NVLIGQDLNG CAFVCGSLSF LDKISCGLTL FVLQSFHSSS PIVAGNYSTA SDLHHQHRQQ  420
RRQTPLKMRQ LLISCAELVS QSDFPAAIRL LSILSSSSSP SGDSIERLVY QFVRALSLRI  480
NRLHHHHHHH GLAGSSLMRM MNDISFPITS TAGPVNYDID PSLQSCYLSL NQITPFIRFA  540
HLTANQAILE AIQVGQQCIH IIDFDIMHGV QWPPLMQALA ERSANTHHPP PMLRITGTGH  600
DLNILHRTGD RLFKFAQSLG LRFEFHPLLV LNEDPTWIAT NFTSMVTILP DEALAVNCML  660
YLQRLLKDDS RDIRLFLHHM KALNPTVVTV AEREANHNHP LFLQRFVEAL DYYTAIFDSL  720
EATLPPNSRE RLAVEQIWFG REIVDIVAAE GENRRERHER LETWEVILRS SGFINVPLSP  780
FAHSQAKLLL RLHYPSEGYQ LQIVNNCFFL ERVRTVKVLR VEAALLHRAK TRGGRGGGWV  840
WLHCTHGHGR MTGSVPSIYL SIPSLDVTSP LLSSPLWSSV FFVESTQKVL I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-53	430	790	6	340	GRAS family transcription factor containing protein, expressed

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP236114	0.0	KP236114.1 Gossypium hirsutum LAS-like transcription factor (LAS) mRNA, complete cds.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	1e-116	GRAS family protein