PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D08G0336

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 214aa MW: 24556.3 Da PI: 6.1593

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D08G0336	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.4e-21	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l +++e++V++WFqNrRa+ k+ Gh_D08G0336 90 RQRWTPTALQLQILENIYEQgTGTPSKQKIKEMASELaqhgQISETNVYNWFQNRRARSKR 150 89***************99************************************97 PP
2	Wus_type_Homeobox	98.7	4.6e-32	89	151	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPt+ Q++iLe++y++G+ tP+k++i+++++eL+++G+i+++NV++WFQNr+aR+++k Gh_D08G0336 89 ARQRWTPTALQLQILENIYEQGTGTPSKQKIKEMASELAQHGQISETNVYNWFQNRRARSKRK 151 789***********************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-17	86	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.641	86	151	IPR001356	Homeobox domain
SMART	SM00389	4.7E-13	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.85E-18	89	153	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-18	90	150	IPR001356	Homeobox domain
CDD	cd00086	6.66E-13	90	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MDWENQEMQH HQQGEDYLQY QIQNGVCGKV MTDEQVEELR KQIVAYSAIS EQLAELHKSM 60 STHHNFTGIR VGNLYCDPIS ASVGHKITAR QRWTPTALQL QILENIYEQG TGTPSKQKIK 120 EMASELAQHG QISETNVYNW FQNRRARSKR KLQSSTDSVN AETDMSTKEK RTKPVDPDFI 180 TNISQGVESF YFQASISRGY DSYNNLAEQF ELLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589236	5e-75	JX589236.1 Gossypium hirsutum clone NBRI_GE23895 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725792.1	1e-162	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-60	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A1U8MG37	1e-160	A0A1U8MG37_GOSHI; WUSCHEL-related homeobox 8-like
STRING	Gorai.004G038300.1	1e-156	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	7e-60	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]