PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0475
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 326aa    MW: 35211.8 Da    PI: 8.4035
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0475genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.4e-105275427
                 ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                   C +++rtG+C yG++C+++H++
  Gh_D08G0475 52 TDCVYYMRTGFCGYGNSCRYNHPR 75
                 68********************96 PP
2zf-CCCH41.81.8e-1394120127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C+f+++tGtCk+G++CkF+H++
  Gh_D08G0475  94 PGEPVCQFYLKTGTCKFGASCKFHHPK 120
                  5789*********************96 PP
3zf-CCCH37.34.6e-12141166227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C+++++tG+Ck+G +CkF+H++
  Gh_D08G0475 141 GEKECSYYLKTGQCKFGITCKFHHPQ 166
                  7899********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.8E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1694876IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-65076IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-893120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.61593121IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1195120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-697121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-698119IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821139167IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6141167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4145165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELYGRNPTR NGSQSGYQPE WSPAGPETGL EESRWQLSVR GVESYPERLG VTDCVYYMRT  60
GFCGYGNSCR YNHPRNRAAV EAAVRATGEY PERPGEPVCQ FYLKTGTCKF GASCKFHHPK  120
DGGGSFSHVS LNMHGYPLRP GEKECSYYLK TGQCKFGITC KFHHPQPSGT SMSASAPQFY  180
QPVQSPSVPV PEQYGGASTN VRVARPPPLP GSYVQGGAYG PVLFSPGVVP IPGWSHYLAP  240
VSPVLSPGVQ PAVGATSLYG LTHLSSSTPS LAGIIILETG LCHKQIASSA QWDFLYVQGC  300
SLVLSTCRMG TASLGPHANL IIRWEQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.19430.0boll| leaf| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021280725.11e-170zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-132C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A0D2RTX50.0A0A0D2RTX5_GOSRA; Uncharacterized protein
TrEMBLA0A2P5RYS50.0A0A2P5RYS5_GOSBA; Uncharacterized protein
STRINGGorai.004G053200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-124C3H family protein